RUNNAME: Penicillium
MODE: identification
EMAIL: wan101010@snu.ac.kr
GENE:
- ITS
- BenA
- RPB2
- CaM
CONCATENATE: true
DB:
- DB_Penicillium.xlsx
QUERY:
- Query.xlsx
LEVEL: section
MAXOUTGROUP: 3
CONTINUE: false
SEARCH: mmseqs
ALIGNMENT: mafft
TRIM: none
TREE: fasttree
THREAD: auto
CLUSTERING_CUTOFF: 0.97
MAFFT-ALGORITHM: auto
TRIMAL-ALGORITHM: gt
COLLAPSINGDISTCUTOFF: 0.01
BOOTSTRAP: 1000
SOLVEFLAT: true
VERBOSE: 3
CONFIDENT_DB: true
MATRIXFORMAT: csv
WORDSIZE: 7
EVALUE: 1.0e-04
TRIMAL-gt: 0.2
MAFFT-op: 1.3
MAFFT-ep: 0.1
AVX: true
SAVERUN: true
CACHEDB: true
USECACHE: true
QUERYONLY: true
