LICENSE.txt
MANIFEST.in
README.md
setup.py
peptdeep/__init__.py
peptdeep/_nbdev.py
peptdeep/cli.py
peptdeep/gui.py
peptdeep/pretrained_models.py
peptdeep/settings.py
peptdeep/utils.py
peptdeep.egg-info/PKG-INFO
peptdeep.egg-info/SOURCES.txt
peptdeep.egg-info/dependency_links.txt
peptdeep.egg-info/entry_points.txt
peptdeep.egg-info/requires.txt
peptdeep.egg-info/top_level.txt
peptdeep/__pycache__/__init__.cpython-38.pyc
peptdeep/constants/default_settings.yaml
peptdeep/constants/model_const.yaml
peptdeep/mass_spec/__init__.py
peptdeep/mass_spec/match.py
peptdeep/mass_spec/ms_reader.py
peptdeep/model/__init__.py
peptdeep/model/base.py
peptdeep/model/building_block.py
peptdeep/model/ccs.py
peptdeep/model/featurize.py
peptdeep/model/ms2.py
peptdeep/model/rt.py
peptdeep/protein/__init__.py
peptdeep/protein/fasta.py
peptdeep/protein/inference.py
peptdeep/protein/protease.yaml
peptdeep/psm_frag_reader/__init__.py
peptdeep/psm_frag_reader/library_frag_reader.py
peptdeep/psm_frag_reader/maxquant_frag_reader.py
peptdeep/psm_frag_reader/psm_frag_reader.py
peptdeep/psm_frag_reader/psmlabel_reader.py
peptdeep/rescore/__init__.py
peptdeep/rescore/fdr.py
peptdeep/rescore/feature_extractor.py
peptdeep/rescore/percolator.py
peptdeep/spec_lib/__init__.py
peptdeep/spec_lib/predict_lib.py
peptdeep/spec_lib/translate.py