MANIFEST.in
README.md
setup.cfg
setup.py
MACE/__init__.py
MACE.egg-info/PKG-INFO
MACE.egg-info/SOURCES.txt
MACE.egg-info/dependency_links.txt
MACE.egg-info/top_level.txt
MACE/General/File.py
MACE/General/GeneralCollections.py
MACE/General/__init__.py
MACE/Parsers/Abstract.py
MACE/Parsers/CCF.py
MACE/Parsers/SNPeff.py
MACE/Parsers/VCF.py
MACE/Parsers/__init__.py
scripts/FS_distribution.py
scripts/add_additional_info_to_snpeff_tab_file.py
scripts/clustering_pipeline.py
scripts/draw_location_pie_plot.py
scripts/draw_rainfall_plot.py
scripts/extract_clusters.py
scripts/extract_homozygous_chains.py
scripts/extract_snp_eff_info.py
scripts/generate_uniform_snp_set.py
scripts/number_of_variants.py
scripts/set_filters_for_indels_in_homopolymers.py
scripts/set_repeat_filters.py
scripts/test_clustering_thresholds.py