Metadata-Version: 2.1
Name: pertpy
Version: 0.6.0
Summary: Perturbation Analysis in the scverse ecosystem.
Project-URL: Documentation, https://pertpy.readthedocs.io
Project-URL: Source, https://github.com/theislab/pertpy
Project-URL: Home-page, https://github.com/theislab/pertpy
Author: Lukas Heumos, Yuge Ji, Alejandro Tejada, Johannes Köster, Emma Dann, Xinyue Zhang, Xichen Wu, Amir Moinfar, Sergei Rybakov, Tessa Green, Stefan Peidli, Antonia Schumacher
Maintainer-email: Lukas Heumos <lukas.heumos@posteo.net>
License: MIT License
        
        Copyright (c) 2021, Lukas Heumos
        
        Permission is hereby granted, free of charge, to any person obtaining a copy
        of this software and associated documentation files (the "Software"), to deal
        in the Software without restriction, including without limitation the rights
        to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
        copies of the Software, and to permit persons to whom the Software is
        furnished to do so, subject to the following conditions:
        
        The above copyright notice and this permission notice shall be included in all
        copies or substantial portions of the Software.
        
        THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
        IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
        FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
        AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
        LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
        OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
        SOFTWARE.
License-File: LICENSE
Requires-Python: >=3.9
Requires-Dist: adjusttext
Requires-Dist: anndata
Requires-Dist: arviz
Requires-Dist: decoupler
Requires-Dist: ipywidgets
Requires-Dist: muon
Requires-Dist: numba
Requires-Dist: numpyro
Requires-Dist: openpyxl
Requires-Dist: ott-jax
Requires-Dist: plotnine
Requires-Dist: requests
Requires-Dist: rich
Requires-Dist: scanpy[leiden]
Requires-Dist: scikit-misc
Requires-Dist: scipy
Requires-Dist: scvi-tools
Requires-Dist: sparsecca
Requires-Dist: toytree
Provides-Extra: coda
Requires-Dist: ete3; extra == 'coda'
Requires-Dist: pyqt5; extra == 'coda'
Provides-Extra: dev
Requires-Dist: pre-commit; extra == 'dev'
Provides-Extra: doc
Requires-Dist: docutils!=0.18.*,!=0.19.*,>=0.8; extra == 'doc'
Requires-Dist: furo; extra == 'doc'
Requires-Dist: ipykernel; extra == 'doc'
Requires-Dist: ipython; extra == 'doc'
Requires-Dist: myst-nb; extra == 'doc'
Requires-Dist: myst-parser; extra == 'doc'
Requires-Dist: nbsphinx; extra == 'doc'
Requires-Dist: nbsphinx-link; extra == 'doc'
Requires-Dist: pyenchant; extra == 'doc'
Requires-Dist: pygments; extra == 'doc'
Requires-Dist: sphinx-autodoc-typehints; extra == 'doc'
Requires-Dist: sphinx-automodapi; extra == 'doc'
Requires-Dist: sphinx-copybutton; extra == 'doc'
Requires-Dist: sphinx-design; extra == 'doc'
Requires-Dist: sphinx-gallery; extra == 'doc'
Requires-Dist: sphinx-last-updated-by-git; extra == 'doc'
Requires-Dist: sphinx-remove-toctrees; extra == 'doc'
Requires-Dist: sphinx>=4; extra == 'doc'
Requires-Dist: sphinxcontrib-bibtex>=1.0.0; extra == 'doc'
Requires-Dist: sphinxext-opengraph; extra == 'doc'
Provides-Extra: test
Requires-Dist: pytest; extra == 'test'
Requires-Dist: pytest-cov; extra == 'test'
Description-Content-Type: text/markdown

[![Black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)
[![Build](https://github.com/theislab/pertpy/actions/workflows/build.yml/badge.svg)](https://github.com/theislab/pertpy/actions/workflows/build.yml)
[![Codecov](https://codecov.io/gh/theislab/pertpy/branch/master/graph/badge.svg)](https://codecov.io/gh/theislab/pertpy)
[![License](https://img.shields.io/github/license/theislab/pertpy)](https://opensource.org/licenses/Apache2.0)
[![PyPI](https://img.shields.io/pypi/v/pertpy.svg)](https://pypi.org/project/pertpy/)
[![Python Version](https://img.shields.io/pypi/pyversions/pertpy)](https://pypi.org/project/pertpy)
[![Read the Docs](https://img.shields.io/readthedocs/pertpy/latest.svg?label=Read%20the%20Docs)](https://pertpy.readthedocs.io/)
[![Test](https://github.com/theislab/pertpy/actions/workflows/test.yml/badge.svg)](https://github.com/theislab/pertpy/actions/workflows/test.yml)
[![PyPI](https://img.shields.io/badge/pre--commit-enabled-brightgreen?logo=pre-commit&logoColor=white)](https://github.com/pre-commit/pre-commit)

# pertpy

![pertpy-wide1](https://user-images.githubusercontent.com/21954664/235677503-0c72f90d-3f6d-4a16-a1ff-ff8c11a540fb.png)

## Documentation

Please read the [documentation](https://pertpy.readthedocs.io/en/latest).

## Installation

You can install _pertpy_ via [pip] from [PyPI]:

```console
$ pip install pertpy
```

[pip]: https://pip.pypa.io/
[pypi]: https://pypi.org/
[usage]: https://pertpy.readthedocs.io/en/latest/usage/usage.html
