id: https://w3id.org/biolink/biolink-model
name: Biolink_Model
description: Entity and association taxonomy and datamodel for life-sciences data
license: https://creativecommons.org/publicdomain/zero/1.0/

prefixes:
  biolink: https://w3id.org/biolink/vocab/
  linkml: https://w3id.org/linkml/
  OBAN: http://purl.org/oban/
  SIO: http://semanticscience.org/resource/SIO_
  wgs: http://www.w3.org/2003/01/geo/wgs84_pos
  qud: http://qudt.org/1.1/schema/qudt#
  skos: http://www.w3.org/2004/02/skos/core#
  UMLSSG: https://uts-ws.nlm.nih.gov/rest/semantic-network/semantic-network/current/GROUP/
  UMLSST: https://uts-ws.nlm.nih.gov/rest/semantic-network/semantic-network/current/STY/
  UMLSSC: https://uts-ws.nlm.nih.gov/rest/semantic-network/semantic-network/current/TUI/

default_prefix: biolink
default_range: string

default_curi_maps:
  - obo_context
  - monarch_context
  - idot_context
  - semweb_context

emit_prefixes:
  - rdf
  - rdfs
  - xsd
  - skos
  - OIO
  - BIOGRID


imports:
  - linkml:types

types:
  identifier type:
    base: ElementIdentifier
    uri: xsd:anyURI
    description: >-
      A string that is intended to uniquely identify a thing
      May be URI in full or compact (CURIE) form


slots:
  id:
    identifier: true
    domain: named thing
    range: identifier type
    required: true

  name:
    domain: named thing
    range: string
    required: true


classes:
  named thing:
    description: "a databased entity or concept/class"
    slots:
      - id
      - name

  anatomical entity:
    is_a: named thing
    subclass_of: UBERON:0001062
