id: genotype_to_variant_association
schema_generating: true
description: Any association between a genotype and a sequence variant.
display_name: genotype to variant association
document_category: genotype to variant association
weight: 20
fields:
- id: id
  description: A unique identifier for an entity. Must be either a CURIE shorthand
    for a URI or a complete URI
  display_name: id
- id: iri
  description: An IRI for an entity. This is determined by the id using expansion
    rules.
  display_name: iri
- id: name
  description: A human-readable name for an attribute or entity.
  display_name: name
- id: description
  description: a human-readable description of an entity
  display_name: description
- id: source
  description: a lightweight analog to the association class 'has provider' slot,
    which is the string name, or the authoritative (i.e. database) namespace, designating
    the origin of the entity to which the slot belongs.
  display_name: source
- id: provided_by
  description: connects an association to the agent (person, organization or group)
    that provided it
  display_name: provided by
  cardinality: multi
- id: has_attribute
  description: connects any entity to an attribute
  display_name: has attribute
  cardinality: multi
- id: relation
  description: The relation which describes an association between a subject and an
    object in a more granular manner. Usually this is a term from Relation Ontology,
    but it can be any edge CURIE.
  display_name: relation
- id: negated
  description: if set to true, then the association is negated i.e. is not true
  display_name: negated
- id: qualifiers
  description: connects an association to qualifiers that modify or qualify the meaning
    of that association
  display_name: qualifiers
  cardinality: multi
- id: publications
  description: connects an association to publications supporting the association
  display_name: publications
  cardinality: multi
- id: type
  description: rdf:type of biolink:Association should be fixed at rdf:Statement
  display_name: association_type
- id: category
  description: "Name of the high level ontology class in which this entity is categorized.\
    \ Corresponds to the label for the biolink entity type class.\n * In a neo4j database\
    \ this MAY correspond to the neo4j label tag.\n * In an RDF database it should\
    \ be a biolink model class URI.\nThis field is multi-valued. It should include\
    \ values for ancestors of the biolink class; for example, a protein such as Shh\
    \ would have category values `biolink:Protein`, `biolink:GeneProduct`, `biolink:MolecularEntity`,\
    \ ...\nIn an RDF database, nodes will typically have an rdf:type triples. This\
    \ can be to the most specific biolink class, or potentially to a class more specific\
    \ than something in biolink. For example, a sequence feature `f` may have a rdf:type\
    \ assertion to a SO class such as TF_binding_site, which is more specific than\
    \ anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity,\
    \ biolink:NamedThing}"
  display_name: association_category
  cardinality: multi
- id: predicate
  description: the relationship type used to connect genotype to gene
  display_name: genotype to variant association_predicate
- id: subject
  description: parent genotype
  display_name: genotype to variant association_subject
- id: object
  description: gene implicated in genotype
  display_name: genotype to variant association_object
