.auto-changelog
.auto-changelog-template.hbs
.codespellignorelines
.codespellrc
.copier-answers.yml
.flake8
.gitattributes
.gitignore
.pre-commit-config.yaml
.pylintrc
.readthedocs.yml
AUTHORS.md
CHANGELOG.md
CITATION.cff
CONTRIBUTING.md
COPYRIGHT.txt
LICENSE-BSD.txt
LICENSE-LGPL.txt
MANIFEST.in
README.md
codecov.yml
commitlint.config.js
package.json
pyproject.toml
setup.py
tox.ini
.github/dependabot.yml
.github/pull_request_template.md
.github/ISSUE_TEMPLATE/bug_report.yaml
.github/ISSUE_TEMPLATE/config.yml
.github/ISSUE_TEMPLATE/feature_request.yaml
.github/ISSUE_TEMPLATE/how_to_use.yaml
.github/workflows/commitlint.yml
.github/workflows/publish-sdist.yml
.github/workflows/run-tox.yml
TMD.egg-info/PKG-INFO
TMD.egg-info/SOURCES.txt
TMD.egg-info/dependency_links.txt
TMD.egg-info/requires.txt
TMD.egg-info/top_level.txt
docs/Makefile
docs/source/api_ref.rst
docs/source/changelog.rst
docs/source/conf.py
docs/source/contributing.rst
docs/source/index.rst
examples/classifier.py
examples/distances_example.py
examples/extract_ph.py
examples/write_swc.py
examples/Advanced/advanced_plot.py
examples/Advanced/classification.py
examples/Advanced/diversity_index.py
examples/Advanced/matching.py
examples/Advanced/polar_plot_generation.py
examples/Advanced/time_series_tmd.py
examples/Advanced/variability.py
tests/__init__.py
tests/conftest.py
tests/test_h5.py
tests/test_io.py
tests/test_neuron.py
tests/test_neuron_conversion.py
tests/test_neuron_methods.py
tests/test_population.py
tests/test_soma.py
tests/test_soma_methods.py
tests/test_swc.py
tests/test_topology_analysis.py
tests/test_topology_distances.py
tests/test_topology_methods.py
tests/test_topology_persistent_properties.py
tests/test_topology_vectorizations.py
tests/test_tree.py
tests/test_tree_methods.py
tests/test_utils.py
tests/data/basic.swc
tests/data/basic_exotic_section_types.swc
tests/data/basic_no_comments.swc
tests/data/basic_no_sec_ids.swc
tests/data/basic_options.swc
tests/data/neuron.swc
tests/data/neuron_ph_1.txt
tests/data/neuron_ph_2.txt
tests/data/sample.swc
tests/data/sample_disordered.swc
tests/data/sample_disordered_v1.h5
tests/data/sample_ph_0.txt
tests/data/sample_ph_1.txt
tests/data/sample_v0.h5
tests/data/sample_v1.h5
tests/data/sample_v2.h5
tests/data/test_morph.swc
tests/data/test_morph_v1.h5
tests/data/test_morph_v2.h5
tests/data/upper_case_names/Sample1.ASC
tests/data/upper_case_names/Sample1.H5
tests/data/upper_case_names/Sample1.SWC
tests/data/upper_case_names/Sample2.AsC
tests/data/upper_case_names/Sample2.SwC
tests/data/valid/C010398B-P2.CNG.swc
tests/data/valid/C010398B-P2.h5
tests/data/valid/sample.swc
tests/data/valid/sample_v1.h5
tests/data/valid/sample_v2.h5
tmd/__init__.py
tmd/utils.py
tmd/Neuron/Neuron.py
tmd/Neuron/__init__.py
tmd/Neuron/methods.py
tmd/Population/Population.py
tmd/Population/__init__.py
tmd/Soma/Soma.py
tmd/Soma/__init__.py
tmd/Soma/methods.py
tmd/Topology/__init__.py
tmd/Topology/analysis.py
tmd/Topology/distances.py
tmd/Topology/methods.py
tmd/Topology/persistent_properties.py
tmd/Topology/statistics.py
tmd/Topology/transformations.py
tmd/Topology/vectorizations.py
tmd/Tree/Tree.py
tmd/Tree/__init__.py
tmd/Tree/methods.py
tmd/io/__init__.py
tmd/io/conversion.py
tmd/io/h5.py
tmd/io/io.py
tmd/io/swc.py
tmd/view/__init__.py
tmd/view/common.py
tmd/view/plot.py
tmd/view/view.py