README.rst
setup.py
Files/__init__.py
VEnCode/__init__.py
VEnCode/common_variables.py
VEnCode/internals.py
VEnCode/internals_extensions.py
VEnCode/view.py
VEnCode.egg-info/PKG-INFO
VEnCode.egg-info/SOURCES.txt
VEnCode.egg-info/dependency_links.txt
VEnCode.egg-info/requires.txt
VEnCode.egg-info/top_level.txt
VEnCode/utils/__init__.py
VEnCode/utils/decorators.py
VEnCode/utils/dir_and_file_handling.py
VEnCode/utils/exception_handlers.py
VEnCode/utils/exceptions.py
VEnCode/utils/general_utils.py
VEnCode/utils/input_handlers.py
VEnCode/utils/pandas_utils.py
VEnCode/utils/plotting_utils.py
VEnCode/utils/sqlite_utils.py
VEnCode/utils/util.py
VEnCode/utils/validation_utils.py
scripts/__init__.py
scripts/check_element_expression.py
scripts/check_vencode_expression_from_file.py
scripts/collapse_vencodes_percent_active.py
scripts/e_value_statistics.py
scripts/external_data_set_analysis.py
scripts/generate_datasets.py
scripts/generate_datasets_cancer.py
scripts/get_validated_vencodes.py
scripts/get_vencode_external.py
scripts/get_vencodes.py
scripts/inter_robustness.py
scripts/inter_robustness_heu2.py
scripts/intra_robustness.py
scripts/intra_robustness_heu2.py
scripts/num_validated_elements.py
scripts/percent_re_matching_datasets.py
scripts/percentage_cts_with_ven.py
scripts/percentage_cts_with_ven_heu2.py
scripts/table_vens.py
scripts/validation.py
scripts/validation_utils.py
scripts/vencodes_percent_active.py
scripts/venn_diagrams_validation.py
scripts/Legacy Scripts/Main_Fantom.py
scripts/Legacy Scripts/__init__.py
scripts/Legacy Scripts/classes.py
scripts/Legacy Scripts/figures_1.py
scripts/Legacy Scripts/figures_2.py
scripts/Legacy Scripts/find_vencodes_each_celltype.py
scripts/Legacy Scripts/generate_datasets_old.py
scripts/Legacy Scripts/get_best_vencode.py
scripts/Legacy Scripts/get_vencodes.py
scripts/Legacy Scripts/inter_robustness.py
scripts/Legacy Scripts/intra_robustness_old.py
scripts/Legacy Scripts/plots_evalue_norm.py
scripts/Legacy Scripts/sampling_vs_heuristic.py
scripts/Legacy Scripts/test_databaseOperations.py
scripts/Legacy Scripts/test_utils.py
scripts/Legacy Scripts/ven_diagrams.py
tests/__init__.py
tests/test_internals.py