README.md
setup.py
cathpy/__init__.py
cathpy/align.py
cathpy/datafiles.py
cathpy/error.py
cathpy/funfhmmer.py
cathpy/models.py
cathpy/tests.py
cathpy/util.py
cathpy/version.py
cathpy.egg-info/PKG-INFO
cathpy.egg-info/SOURCES.txt
cathpy.egg-info/dependency_links.txt
cathpy.egg-info/requires.txt
cathpy.egg-info/top_level.txt
cathpy/tools/GroupSim/README.md
cathpy/tools/GroupSim/group_sim_sdp.py
cathpy/tools/GroupSim/group_sim_sdp_without_cons.py
cathpy/tools/GroupSim/groupsim2jalview.pl
cathpy/tools/GroupSim/mclachlan1972.aa.dat
cathpy/tools/GroupSim/mclachlan1972.dat
cathpy/tools/darwin-x86_64/scorecons
cathpy/tools/data/PET91mod.mat2
cathpy/tools/linux-x86_64/scorecons
scripts/cath-align-scorecons
scripts/cath-align-summary
scripts/cath-funfhmmer-api
scripts/cath-sc-merge-alignment
tests/__init__.py
tests/merge_alignment_test.py
tests/testutils.py
tests/util_test.py