LICENSE
MANIFEST.in
README.rst
setup.cfg
setup.py
versioneer.py
pegasus/__init__.py
pegasus/__main__.py
pegasus/_version.py
pegasus/annotate_cluster/__init__.py
pegasus/annotate_cluster/annotate_cluster.py
pegasus/annotate_cluster/human_brain_cell_markers.json
pegasus/annotate_cluster/human_immune_cell_markers.json
pegasus/annotate_cluster/mouse_brain_cell_markers.json
pegasus/annotate_cluster/mouse_immune_cell_markers.json
pegasus/check_sample_indexes/__init__.py
pegasus/check_sample_indexes/check_sample_indexes.py
pegasus/check_sample_indexes/chromium-dna-sample-indexes-plate.json
pegasus/cite_seq/__init__.py
pegasus/cite_seq/cite_seq.py
pegasus/commands/AggregateMatrix.py
pegasus/commands/AnnotateCluster.py
pegasus/commands/Base.py
pegasus/commands/CITESeq.py
pegasus/commands/CheckSampleIndexes.py
pegasus/commands/Clustering.py
pegasus/commands/ConvertH5SC.py
pegasus/commands/DeAnalysis.py
pegasus/commands/DemuxEM.py
pegasus/commands/DownSample.py
pegasus/commands/FindMarkers.py
pegasus/commands/PARQUET.py
pegasus/commands/Plotting.py
pegasus/commands/SCPOutput.py
pegasus/commands/SubClustering.py
pegasus/commands/View.py
pegasus/commands/__init__.py
pegasus/commands/iPlotting.py
pegasus/demuxEM/__init__.py
pegasus/demuxEM/demuxEM.py
pegasus/demuxEM/down_sampling.py
pegasus/demuxEM/plot.py
pegasus/io/__init__.py
pegasus/io/anndata_legacy.py
pegasus/io/data_structure.py
pegasus/io/io.py
pegasus/misc/__init__.py
pegasus/misc/misc.py
pegasus/pipeline/__init__.py
pegasus/pipeline/demuxEM_pipeline.py
pegasus/pipeline/pipeline.py
pegasus/plotting/__init__.py
pegasus/plotting/iplot_library.py
pegasus/plotting/plot_library.py
pegasus/plotting/plot_qc.py
pegasus/plotting/plot_utils.py
pegasus/plotting/run_plotting.py
pegasus/tools/__init__.py
pegasus/tools/batch_correction.py
pegasus/tools/clustering.py
pegasus/tools/convert_to_parquet.py
pegasus/tools/data_aggregation.py
pegasus/tools/diff_expr.py
pegasus/tools/diffusion_map.py
pegasus/tools/down_sampling.py
pegasus/tools/gradient_boosting.py
pegasus/tools/graph_operations.py
pegasus/tools/hvf_selection.py
pegasus/tools/nearest_neighbors.py
pegasus/tools/net_regressor.py
pegasus/tools/preprocessing.py
pegasus/tools/pseudotime.py
pegasus/tools/scp_output.py
pegasus/tools/subcluster_utils.py
pegasus/tools/utils.py
pegasus/tools/visualization.py
pegasus/utils/__init__.py
pegasus/utils/decorators.py
pegasuspy.egg-info/PKG-INFO
pegasuspy.egg-info/SOURCES.txt
pegasuspy.egg-info/dependency_links.txt
pegasuspy.egg-info/entry_points.txt
pegasuspy.egg-info/requires.txt
pegasuspy.egg-info/top_level.txt
tests/__init__.py
tests/test_aggregate.py
tests/test_io.py
tests/test_preprocessing.py
tests/test_util.py