Metadata-Version: 2.0
Name: sctransfer
Version: 0.0.9
Summary: Python part for scRNA-seq transfer learning denoising tool SAVER-X
Home-page: https://github.com/jingshuw/sctransfer
Author: Jingshu Wang
Author-email: wangjingshususan@gmail.com
License: GPL-3
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Operating System :: OS Independent
Requires-Python: >=3.5
Description-Content-Type: text/markdown
Requires-Dist: numpy (>=1.7)
Requires-Dist: keras (>=2.2.2)
Requires-Dist: tensorflow (>=2.0.0)
Requires-Dist: h5py
Requires-Dist: six (>=1.10.0)
Requires-Dist: scikit-learn
Requires-Dist: scanpy
Requires-Dist: anndata
Requires-Dist: pandas

# The supporting Python package of SAVER-X

This package is designed to be used by the R code of [SAVER-X](https://github.com/jingshuw/SAVERX).
It contains simplified code from the python [dca](http://github.com/theislab/dca) package and the new Python code for transfer learning.

One can also use this Python package for pre-training using public data. Instructions on pre-training will come out soon.

## Installation:

```
pip install sctransfer
```
The package only supports Python (>=3.5). 

Update: the package now works with tensorflow 2.


