LICENSE.txt
MANIFEST.in
README.md
setup.py
SigProfilerAssignment/Analyzer.py
SigProfilerAssignment/__init__.py
SigProfilerAssignment/decompose_subroutines.py
SigProfilerAssignment/decomposition.py
SigProfilerAssignment/single_sample.py
SigProfilerAssignment/version.py
SigProfilerAssignment.egg-info/PKG-INFO
SigProfilerAssignment.egg-info/SOURCES.txt
SigProfilerAssignment.egg-info/dependency_links.txt
SigProfilerAssignment.egg-info/not-zip-safe
SigProfilerAssignment.egg-info/requires.txt
SigProfilerAssignment.egg-info/top_level.txt
SigProfilerAssignment/DecompositionPlots/.DS_Store
SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py
SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py
SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py
SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py
SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py
SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py
SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py
SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py
SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Accolade_fermante.png
SigProfilerAssignment/DecompositionPlots/ReferenceFiles/CREDIT.md
SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts/Arial Bold.ttf
SigProfilerAssignment/data/21_breast_WGS_substitutions.mat
SigProfilerAssignment/data/CNV_features.tsv
SigProfilerAssignment/data/CNV_signatures.txt
SigProfilerAssignment/data/CN_classes_dictionary.txt
SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx
SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx
SigProfilerAssignment/data/Samples.txt
SigProfilerAssignment/data/csvexample.csv
SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv
SigProfilerAssignment/data/sigProfiler_ID_signatures.csv
SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt
SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt
SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt
SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt
SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt
SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt
SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt
SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt
SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt
SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt
SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt
SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt
SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt
SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt
SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt
SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt
SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt
SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt
SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt
SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt
SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt
SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv
SigProfilerAssignment/data/tests/txt_input/DBS78_S3_Signatures.txt
SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt
SigProfilerAssignment/data/tests/txt_input/sample_matrix.txt
SigProfilerAssignment/data/tests/txt_input/sample_matrix_DBS.txt
SigProfilerAssignment/data/tests/txt_input/sample_matrix_SBS.txt
SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf
SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf
SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf
SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf
SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf