.gitignore
.pylintrc
.travis.yml
LICENSE
Makefile
Pipfile
Pipfile.lock
README.md
conda_build_config.yaml
environment.yml
meta.yaml
setup.cfg
setup.py
sphinx/Makefile
sphinx/source/CompDynamics.rst
sphinx/source/FileDynamics.rst
sphinx/source/StepSize.rst
sphinx/source/TimeDep.rst
sphinx/source/TransData.rst
sphinx/source/TrimerDynamics.rst
sphinx/source/TrimerEquil.rst
sphinx/source/conf.py
sphinx/source/dynamics.rst
sphinx/source/equil.rst
sphinx/source/index.rst
sphinx/source/molecule.rst
src/sdanalysis/StepSize.py
src/sdanalysis/__init__.py
src/sdanalysis/_order.cpp
src/sdanalysis/_order.pyx
src/sdanalysis/dynamics.py
src/sdanalysis/main.py
src/sdanalysis/math_helper.c
src/sdanalysis/math_helper.pxd
src/sdanalysis/math_helper.pyx
src/sdanalysis/molecules.py
src/sdanalysis/order.py
src/sdanalysis/params.py
src/sdanalysis/read.py
src/sdanalysis/relaxation.py
src/sdanalysis/run_analysis.py
src/sdanalysis/thermodynamics.py
src/sdanalysis/version.py
src/sdanalysis.egg-info/PKG-INFO
src/sdanalysis.egg-info/SOURCES.txt
src/sdanalysis.egg-info/dependency_links.txt
src/sdanalysis.egg-info/entry_points.txt
src/sdanalysis.egg-info/requires.txt
src/sdanalysis.egg-info/top_level.txt
src/sdanalysis/figures/__init__.py
src/sdanalysis/figures/colour.py
src/sdanalysis/figures/configuration.py
src/sdanalysis/figures/interactive_config.py
src/sdanalysis/figures/thermodynamics.py
src/sdanalysis/models/dt-Trimer-model.pkl
src/sdanalysis/models/knn-Trimer-model.pkl
src/voro++/Doxyfile
src/voro++/Makefile
src/voro++/Makefile.dep
src/voro++/README
src/voro++/c_loops.cc
src/voro++/c_loops.hh
src/voro++/cell.cc
src/voro++/cell.hh
src/voro++/cmd_line.cc
src/voro++/common.cc
src/voro++/common.hh
src/voro++/config.hh
src/voro++/container.cc
src/voro++/container.hh
src/voro++/container_prd.cc
src/voro++/container_prd.hh
src/voro++/pre_container.cc
src/voro++/pre_container.hh
src/voro++/rad_option.hh
src/voro++/unitcell.cc
src/voro++/unitcell.hh
src/voro++/v_base.cc
src/voro++/v_base.hh
src/voro++/v_base_wl.cc
src/voro++/v_compute.cc
src/voro++/v_compute.hh
src/voro++/voro++.cc
src/voro++/voro++.hh
src/voro++/wall.cc
src/voro++/wall.hh
src/voro++/worklist.hh
src/voro++/worklist_gen.pl
test/__init__.py
test/argparse_test.py
test/bokeh_test.py
test/dynamics_test.py
test/figures_test.py
test/math_helper_test.py
test/molecule_test.py
test/order_test.py
test/params_test.py
test/read_test.py
test/relaxation_test.py
test/sdanalysis_test.py
test/stepsize_test.py
test/data/Trimer-13.50-0.40-p2.gsd
test/data/Trimer-13.50-0.40-p2gg.gsd
test/data/Trimer-13.50-0.40-pg.gsd
test/data/Trimer-13.50-3.00.gsd
test/data/thermo-Trimer-P1.00-T0.30-I1.00-pg.log
test/data/trajectory-13.50-3.00.gsd