LICENSE
README.md
setup.py
Analysis/F1.py
Analysis/__init__.py
Analysis/align_gen_cover.py
Analysis/analy_2500vs900.py
Analysis/analy_compare.py
Analysis/analy_gatherInfo.py
Analysis/analy_getf1.py
Analysis/analy_grid_search.py
Analysis/checkm2_eval.py
Analysis/code_test.py
Analysis/utils.py
Analysis/vamb_benchmark.py
CompleteBin.egg-info/PKG-INFO
CompleteBin.egg-info/SOURCES.txt
CompleteBin.egg-info/dependency_links.txt
CompleteBin.egg-info/entry_points.txt
CompleteBin.egg-info/not-zip-safe
CompleteBin.egg-info/requires.txt
CompleteBin.egg-info/top_level.txt
Src/Binning_steps.py
Src/IO.py
Src/__init__.py
Src/cli.py
Src/logger.py
Src/pretrain.py
Src/CallGenes/__init__.py
Src/CallGenes/gene_utils.py
Src/CallGenes/hmm_utils.py
Src/CallGenes/pfam.py
Src/Cluster/__init__.py
Src/Cluster/cluster.py
Src/Cluster/first_cluster.py
Src/Cluster/first_cluster_utils.py
Src/Cluster/sec_cluster.py
Src/Cluster/sec_cluster_utils.py
Src/Cluster/split_utils.py
Src/DataProcess/__init__.py
Src/DataProcess/data_utils.py
Src/Dereplication/__init__.py
Src/Dereplication/checkm_utils.py
Src/Dereplication/galah_utils.py
Src/Model/__init__.py
Src/Model/model.py
Src/Seqs/__init__.py
Src/Seqs/seq_info.py
Src/Seqs/seq_utils.py
Src/Trainer/__init__.py
Src/Trainer/dataset.py
Src/Trainer/loss.py
Src/Trainer/optimizer.py
Src/Trainer/sampler.py
Src/Trainer/ssmt_v2.py
Src/Trainer/trainer.py
Src/Trainer/warmup.py