.pre-commit-config.yaml
LICENCE
MANIFEST.in
THANKS.md
pyproject.toml
requirements.txt
setup.cfg
setup.py
setup_win.bat
docs/banner.png
docs/conf.py
docs/config.md
docs/formats.md
docs/gui.md
docs/make_programs_md.py
docs/programs.md
docs/setup.md
docs/tem_api.md
docs/tvips.md
instamatic/__init__.py
instamatic/acquire_at_items.py
instamatic/admin.py
instamatic/banner.py
instamatic/browser.py
instamatic/exceptions.py
instamatic/goniotool.py
instamatic/gridmontage.py
instamatic/image_utils.py
instamatic/imreg.py
instamatic/io.py
instamatic/main.py
instamatic/montage.py
instamatic/tools.py
instamatic.egg-info/PKG-INFO
instamatic.egg-info/SOURCES.txt
instamatic.egg-info/dependency_links.txt
instamatic.egg-info/entry_points.txt
instamatic.egg-info/not-zip-safe
instamatic.egg-info/requires.txt
instamatic.egg-info/top_level.txt
instamatic/TEMController/TEMController.py
instamatic/TEMController/__init__.py
instamatic/TEMController/deflectors.py
instamatic/TEMController/fei_microscope.py
instamatic/TEMController/fei_simu_microscope.py
instamatic/TEMController/jeol_microscope.py
instamatic/TEMController/lenses.py
instamatic/TEMController/microscope.py
instamatic/TEMController/microscope_client.py
instamatic/TEMController/simu_microscope.py
instamatic/TEMController/stage.py
instamatic/TEMController/states.py
instamatic/calibrate/__init__.py
instamatic/calibrate/calibrate_beamshift.py
instamatic/calibrate/calibrate_brightness.py
instamatic/calibrate/calibrate_directbeam.py
instamatic/calibrate/calibrate_imageshift12.py
instamatic/calibrate/calibrate_stage_lowmag.py
instamatic/calibrate/calibrate_stage_mag1.py
instamatic/calibrate/calibrate_stagematrix.py
instamatic/calibrate/center_z.py
instamatic/calibrate/filenames.py
instamatic/calibrate/fit.py
instamatic/camera/CCDCOM.h
instamatic/camera/CCDCOM2_x64_gatan.dll
instamatic/camera/CCDCOM2_x64_simulation.dll
instamatic/camera/CCDCOM2_x86_gatan.dll
instamatic/camera/CCDCOM2_x86_simulation.dll
instamatic/camera/EMCameraObj.dll
instamatic/camera/__init__.py
instamatic/camera/camera.py
instamatic/camera/camera_client.py
instamatic/camera/camera_emmenu.py
instamatic/camera/camera_gatan.py
instamatic/camera/camera_gatan2.py
instamatic/camera/camera_merlin.py
instamatic/camera/camera_serval.py
instamatic/camera/camera_simu.py
instamatic/camera/camera_timepix.py
instamatic/camera/fakevideostream.py
instamatic/camera/gatansocket3.md
instamatic/camera/gatansocket3.py
instamatic/camera/merlin_io.py
instamatic/camera/mpxhwrelaxd.dll
instamatic/camera/timepix.lockfile
instamatic/camera/videostream.py
instamatic/camera/tpx/171207_with_flatfield.bpc
instamatic/camera/tpx/171207_with_flatfield.bpc.dacs
instamatic/camera/tpx/HW.dacs
instamatic/camera/tpx/config.txt
instamatic/config/__init__.py
instamatic/config/autoconfig.py
instamatic/config/config_updater.py
instamatic/config/defaults.yaml
instamatic/config/settings.yaml
instamatic/config/utils.py
instamatic/config/alignments/neutral.yaml
instamatic/config/calibration/orius.yaml
instamatic/config/calibration/simulate.yaml
instamatic/config/calibration/timepix.yaml
instamatic/config/calibration/tvips-f416.yaml
instamatic/config/camera/merlin.yaml
instamatic/config/camera/orius.yaml
instamatic/config/camera/serval.yaml
instamatic/config/camera/simulate.yaml
instamatic/config/camera/simulateDLL.yaml
instamatic/config/camera/timepix.yaml
instamatic/config/camera/tvips-f416.yaml
instamatic/config/camera/tvips-xf416.yaml
instamatic/config/microscope/fei_simu.yaml
instamatic/config/microscope/fei_themisZ.yaml
instamatic/config/microscope/jeol-1400.yaml
instamatic/config/microscope/jeol.yaml
instamatic/config/microscope/simulate.yaml
instamatic/config/scripts/readme.md
instamatic/experiments/__init__.py
instamatic/experiments/autocred/__init__.py
instamatic/experiments/autocred/experiment.py
instamatic/experiments/cred/__init__.py
instamatic/experiments/cred/experiment.py
instamatic/experiments/cred_gatan/__init__.py
instamatic/experiments/cred_gatan/experiment.py
instamatic/experiments/cred_tvips/__init__.py
instamatic/experiments/cred_tvips/experiment.py
instamatic/experiments/red/__init__.py
instamatic/experiments/red/experiment.py
instamatic/experiments/serialed/__init__.py
instamatic/experiments/serialed/experiment.py
instamatic/formats/__init__.py
instamatic/formats/adscimage.py
instamatic/formats/csvIO.py
instamatic/formats/mrc.py
instamatic/formats/util.py
instamatic/formats/xdscbf.py
instamatic/gui/__init__.py
instamatic/gui/about_frame.py
instamatic/gui/autocred_frame.py
instamatic/gui/base_module.py
instamatic/gui/console_frame.py
instamatic/gui/cred_fei_frame.py
instamatic/gui/cred_frame.py
instamatic/gui/cred_tvips_frame.py
instamatic/gui/ctrl_frame.py
instamatic/gui/debug_frame.py
instamatic/gui/defocus_button.py
instamatic/gui/gui.py
instamatic/gui/io_frame.py
instamatic/gui/jobs.py
instamatic/gui/machine_learning_frame.py
instamatic/gui/modules.py
instamatic/gui/mpl_frame.py
instamatic/gui/red_frame.py
instamatic/gui/sed_frame.py
instamatic/gui/videostream_frame.py
instamatic/neural_network/__init__.py
instamatic/neural_network/neural_network.py
instamatic/neural_network/preprocess.py
instamatic/neural_network/preprocess_SerialRED.py
instamatic/neural_network/weights-py2.p
instamatic/neural_network/weights-py3.p
instamatic/processing/ImgConversion.py
instamatic/processing/ImgConversionDM.py
instamatic/processing/ImgConversionTPX.py
instamatic/processing/ImgConversionTVIPS.py
instamatic/processing/XDS_template.py
instamatic/processing/XDS_templateDM.py
instamatic/processing/XDS_templateTPX.py
instamatic/processing/XDS_templateTVIPS.py
instamatic/processing/__init__.py
instamatic/processing/find_crystals.py
instamatic/processing/find_crystals_ilastik.py
instamatic/processing/find_holes.py
instamatic/processing/flatfield.py
instamatic/processing/stretch_correction.py
instamatic/server/TEMServer_FEI.py
instamatic/server/__init__.py
instamatic/server/cam_client.py
instamatic/server/cam_server.py
instamatic/server/dials_server.py
instamatic/server/goniotool_server.py
instamatic/server/serializer.py
instamatic/server/tem_client.py
instamatic/server/tem_server.py
instamatic/server/vm_ubuntu_server.py
instamatic/server/xds_server.py
instamatic/utils/__init__.py
instamatic/utils/beamstop.py
instamatic/utils/high_precision_timers.py
instamatic/utils/progress.py
instamatic/utils/singleton.py
instamatic/utils/spinbox.py
instamatic/utils/xds_parser.py
notebooks/data_collection.ipynb
notebooks/grid_montage_collection.ipynb
notebooks/montage_processing.ipynb
notebooks/nav.nav
notebooks/readme.md
scripts/__init__.py
scripts/browser.py
scripts/center_images_smv.py
scripts/diagnose_beam_drift.py
scripts/learn.py
scripts/make_interval_movie.py
scripts/make_serialed_movie.py
scripts/process_dm.py
scripts/process_tpx.py
scripts/process_tvips.py
scripts/viewer.py
tests/conftest.py
tests/test_camera.py
tests/test_ctrl.py
tests/test_experiments.py
tests/test_formats.py
tests/test_grid_mapping.py
tests/test_merlin_io.py
tests/config/defaults.yaml
tests/config/settings.yaml
tests/config/calibration/test.yaml
tests/config/camera/test.yaml
tests/config/microscope/test.yaml