.gitignore
.pre-commit-config.yaml
LICENSE
README.md
pyproject.toml
setup.cfg
test_all.sh
.github/workflows/ci.yml
.github/workflows/python-publish.yml
.github/workflows/static.yml
docs/contributors.py
docs/generate.py
docs/sphinx/Makefile
docs/sphinx/make.bat
docs/sphinx/source/conf.py
docs/sphinx/source/index.rst
docs/sphinx/source/_static/pydata-custom.css
docs/sphinx/source/_static/rtd-custom.css
docs/sphinx/source/_templates/custom-class-template.rst
docs/sphinx/source/_templates/custom-module-template.rst
docs/sphinx/source/api/Contributors.md
docs/sphinx/source/api/Installation.md
docs/sphinx/source/api/Introduction.md
docs/sphinx/source/api/Quickstart.md
docs/sphinx/source/api/modules.rst
docs/sphinx/source/api/examples/README.md
docs/sphinx/source/api/examples/document.bson
docs/sphinx/source/api/examples/document.json
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docs/sphinx/source/api/examples/document.specification.bson
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docs/sphinx/source/api/examples/document.specification.yaml
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examples/COMBINE.md
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examples/document.bson
examples/document.json
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examples/document.py
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examples/document.specification.json
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examples/document.xml
examples/document.yaml
examples/images/combine.png
examples/images/neuroml.png
examples/images/sbml.png
examples/neuroml2/.test.validate.omt
examples/neuroml2/LEMS_hello_world.xml
examples/neuroml2/NeuroML2.md
examples/neuroml2/NeuroML2.rst
examples/neuroml2/NeuroML2.specification.json
examples/neuroml2/NeuroML2.specification.yaml
examples/neuroml2/TestNeuroML.bson
examples/neuroml2/TestNeuroML.json
examples/neuroml2/TestNeuroML.xml
examples/neuroml2/TestNeuroML.yaml
examples/neuroml2/hello_world_neuroml.net.nml
examples/neuroml2/neuroml2_spec.py
examples/sbml/SBML.md
examples/sbml/SBML.rst
examples/sbml/SBML.specification.json
examples/sbml/SBML.specification.yaml
examples/sbml/example_sbml_minimal.xml
examples/sbml/regenerateAndTest.sh
examples/sbml/sbml32spec.py
examples/sbml/sbml_validators.py
examples/sbml/test_minimal_example.json
examples/sbml/test_minimal_example.xml
examples/sbml/test_minimal_example.yaml
examples/sbml/test_sbml3.py
examples/test/test.md
examples/test/test.py
examples/test/test.specification.yaml
examples/test/test_instance.json
examples/test/test_instance.xml
examples/test/test_instance.yaml
src/modelspec/__init__.py
src/modelspec/base_types.py
src/modelspec/utils.py
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tests/test_base.py
tests/test_utils.py
tests/temp/README.md