.gitignore
.readthedocs.yml
.travis.yml
CONTRIBUTING.md
LICENSE
README.rst
docker-compose.yml
emaligner.yml
emaligner.yml.save
requirements.txt
setup.py
sourceme.sh
test_requirements.txt
.travis/config.yml
.travis/merge_script.sh
.travis/singularity_setup.sh
EMaligner/EMaligner.py
EMaligner/__init__.py
EMaligner/jsongz.py
EMaligner/schemas.py
EMaligner/utils.py
EMaligner.egg-info/PKG-INFO
EMaligner.egg-info/SOURCES.txt
EMaligner.egg-info/dependency_links.txt
EMaligner.egg-info/requires.txt
EMaligner.egg-info/top_level.txt
EMaligner/distributed/README.md
EMaligner/distributed/allen_example_script.pbs
EMaligner/distributed/cori_example_script.sl
EMaligner/distributed/makefile
EMaligner/distributed/bin/.gitignore
EMaligner/distributed/src/Singularity.petsc
EMaligner/distributed/src/Singularity.petsc_solver
EMaligner/distributed/src/em_dist_solve.c
EMaligner/distributed/src/ema.h
EMaligner/distributed/src/hw_config.h
EMaligner/example_jsons/example_montage.json
EMaligner/example_jsons/montage_test.json
EMaligner/example_jsons/small3D_test.json
EMaligner/qctools/CheckPointMatches.py
EMaligner/qctools/CheckResiduals.py
EMaligner/qctools/CheckTransforms.py
EMaligner/qctools/README.md
EMaligner/qctools/__init__.py
EMaligner/qctools/figures/pm_map_example.png
EMaligner/qctools/figures/residual_map_example.png
EMaligner/qctools/figures/transform_map_example.png
EMaligner/transform/__init__.py
EMaligner/transform/affine_model.py
EMaligner/transform/polynomial_model.py
EMaligner/transform/rotation_model.py
EMaligner/transform/similarity_model.py
EMaligner/transform/thinplatespline_model.py
EMaligner/transform/transform.py
EMaligner/transform/translation_model.py
EMaligner/transform/utils.py
docs/Makefile
docs/conf.py
docs/distributed_rm.rst
docs/index.rst
docs/refs.bib
docs/requirements.txt
docs/api/EMaligner/EMaligner.rst
docs/api/EMaligner/jsongz.rst
docs/api/EMaligner/modules.rst
docs/api/EMaligner/schemas.rst
docs/api/EMaligner/transforms.rst
docs/api/EMaligner/utils.rst
docs/user/intro.rst
integration_tests/test_data.py
integration_tests/test_file_io.py
integration_tests/test_jsongz.py
integration_tests/test_montage.py
integration_tests/test_petsc.py
integration_tests/test_plots.py
integration_tests/test_rough.py
integration_tests/test_transforms.py
integration_tests/test_utils.py
integration_tests/test_files/montage_pointmatches.json
integration_tests/test_files/montage_pointmatches_split1.json
integration_tests/test_files/montage_pointmatches_split2.json
integration_tests/test_files/montage_raw_tilespecs.json
integration_tests/test_files/montage_test.json
integration_tests/test_files/rough_input_matches.json
integration_tests/test_files/rough_input_matches_split1.json
integration_tests/test_files/rough_input_matches_split2.json
integration_tests/test_files/rough_input_tiles.json
integration_tests/test_files/rough_test.json
integration_tests/test_files/small3D_test.json
root/__init__.py
root/tested/__init__.py
root/tested/example.py
root/tested/trace_print.py