MANIFEST.in
README
setup.py
/limix-pypi-deploy/External/nlopt/api/deprecated.cpp
/limix-pypi-deploy/External/nlopt/api/f77api.cpp
/limix-pypi-deploy/External/nlopt/api/general.cpp
/limix-pypi-deploy/External/nlopt/api/optimize.cpp
/limix-pypi-deploy/External/nlopt/api/options.cpp
/limix-pypi-deploy/External/nlopt/auglag/auglag.cpp
/limix-pypi-deploy/External/nlopt/bobyqa/bobyqa.cpp
/limix-pypi-deploy/External/nlopt/cdirect/cdirect.cpp
/limix-pypi-deploy/External/nlopt/cdirect/hybrid.cpp
/limix-pypi-deploy/External/nlopt/cobyla/cobyla.cpp
/limix-pypi-deploy/External/nlopt/crs/crs.cpp
/limix-pypi-deploy/External/nlopt/direct/DIRect.cpp
/limix-pypi-deploy/External/nlopt/direct/DIRserial.cpp
/limix-pypi-deploy/External/nlopt/direct/DIRsubrout.cpp
/limix-pypi-deploy/External/nlopt/direct/direct_wrap.cpp
/limix-pypi-deploy/External/nlopt/esch/esch.cpp
/limix-pypi-deploy/External/nlopt/isres/isres.cpp
/limix-pypi-deploy/External/nlopt/luksan/mssubs.cpp
/limix-pypi-deploy/External/nlopt/luksan/plip.cpp
/limix-pypi-deploy/External/nlopt/luksan/plis.cpp
/limix-pypi-deploy/External/nlopt/luksan/pnet.cpp
/limix-pypi-deploy/External/nlopt/luksan/pssubs.cpp
/limix-pypi-deploy/External/nlopt/mlsl/mlsl.cpp
/limix-pypi-deploy/External/nlopt/mma/ccsa_quadratic.cpp
/limix-pypi-deploy/External/nlopt/mma/mma.cpp
/limix-pypi-deploy/External/nlopt/neldermead/nldrmd.cpp
/limix-pypi-deploy/External/nlopt/neldermead/sbplx.cpp
/limix-pypi-deploy/External/nlopt/newuoa/newuoa.cpp
/limix-pypi-deploy/External/nlopt/praxis/praxis.cpp
/limix-pypi-deploy/External/nlopt/slsqp/slsqp.cpp
/limix-pypi-deploy/External/nlopt/stogo/global.cc
/limix-pypi-deploy/External/nlopt/stogo/linalg.cc
/limix-pypi-deploy/External/nlopt/stogo/local.cc
/limix-pypi-deploy/External/nlopt/stogo/stogo.cc
/limix-pypi-deploy/External/nlopt/stogo/tools.cc
/limix-pypi-deploy/External/nlopt/util/mt19937ar.cpp
/limix-pypi-deploy/External/nlopt/util/qsort_r.cpp
/limix-pypi-deploy/External/nlopt/util/redblack.cpp
/limix-pypi-deploy/External/nlopt/util/rescale.cpp
/limix-pypi-deploy/External/nlopt/util/sobolseq.cpp
/limix-pypi-deploy/External/nlopt/util/stop.cpp
/limix-pypi-deploy/External/nlopt/util/timer.cpp
/limix-pypi-deploy/cython/lmm_forest/SplittingCore.cpp
/limix-pypi-deploy/src/interfaces/python/limix_wrap.cpp
/limix-pypi-deploy/src/limix/LMM/kronecker_lmm.cpp
/limix-pypi-deploy/src/limix/LMM/lmm.cpp
/limix-pypi-deploy/src/limix/LMM_forest/lmm_forest.cpp
/limix-pypi-deploy/src/limix/covar/combinators.cpp
/limix-pypi-deploy/src/limix/covar/covariance.cpp
/limix-pypi-deploy/src/limix/covar/dist.cpp
/limix-pypi-deploy/src/limix/covar/freeform.cpp
/limix-pypi-deploy/src/limix/covar/linear.cpp
/limix-pypi-deploy/src/limix/covar/se.cpp
/limix-pypi-deploy/src/limix/gp/gp_Sum.cpp
/limix-pypi-deploy/src/limix/gp/gp_base.cpp
/limix-pypi-deploy/src/limix/gp/gp_kronSum.cpp
/limix-pypi-deploy/src/limix/gp/gp_kronecker.cpp
/limix-pypi-deploy/src/limix/gp/gp_opt.cpp
/limix-pypi-deploy/src/limix/io/dataframe.cpp
/limix-pypi-deploy/src/limix/io/genotype.cpp
/limix-pypi-deploy/src/limix/io/split.cpp
/limix-pypi-deploy/src/limix/likelihood/likelihood.cpp
/limix-pypi-deploy/src/limix/mean/ADataTerm.cpp
/limix-pypi-deploy/src/limix/mean/CData.cpp
/limix-pypi-deploy/src/limix/mean/CKroneckerMean.cpp
/limix-pypi-deploy/src/limix/mean/CLinearMean.cpp
/limix-pypi-deploy/src/limix/mean/CSumLinear.cpp
/limix-pypi-deploy/src/limix/modules/CVarianceDecomposition.cpp
/limix-pypi-deploy/src/limix/utils/beta.cpp
/limix-pypi-deploy/src/limix/utils/brentc.cpp
/limix-pypi-deploy/src/limix/utils/cache.cpp
/limix-pypi-deploy/src/limix/utils/fisherf.cpp
/limix-pypi-deploy/src/limix/utils/gamma.cpp
/limix-pypi-deploy/src/limix/utils/mathfunctions.cpp
/limix-pypi-deploy/src/limix/utils/matrix_helper.cpp
External/nlopt_src.files
External/Eigen/Array
External/Eigen/CMakeLists.txt
External/Eigen/Cholesky
External/Eigen/CholmodSupport
External/Eigen/Core
External/Eigen/Dense
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External/Eigen/Jacobi
External/Eigen/LU
External/Eigen/LeastSquares
External/Eigen/MetisSupport
External/Eigen/OrderingMethods
External/Eigen/PaStiXSupport
External/Eigen/PardisoSupport
External/Eigen/QR
External/Eigen/QtAlignedMalloc
External/Eigen/SPQRSupport
External/Eigen/SVD
External/Eigen/Sparse
External/Eigen/SparseCholesky
External/Eigen/SparseCore
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External/Eigen/StdDeque
External/Eigen/StdList
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External/Eigen/SuperLUSupport
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External/Eigen/src/Eigen2Support/SVD.h
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External/Eigen/src/Eigen2Support/Geometry/AngleAxis.h
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External/Eigen/src/Eigenvalues/CMakeLists.txt
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External/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h
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External/Eigen/src/Eigenvalues/Tridiagonalization.h
External/Eigen/src/Geometry/AlignedBox.h
External/Eigen/src/Geometry/AngleAxis.h
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External/Eigen/src/Geometry/Homogeneous.h
External/Eigen/src/Geometry/Hyperplane.h
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External/Eigen/src/Geometry/Umeyama.h
External/Eigen/src/Geometry/arch/CMakeLists.txt
External/Eigen/src/Geometry/arch/Geometry_SSE.h
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External/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h
External/Eigen/src/Jacobi/CMakeLists.txt
External/Eigen/src/Jacobi/Jacobi.h
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External/Eigen/src/LU/FullPivLU.h
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External/Eigen/src/PaStiXSupport/CMakeLists.txt
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External/Eigen/src/SVD/JacobiSVD.h
External/Eigen/src/SVD/JacobiSVD_MKL.h
External/Eigen/src/SVD/UpperBidiagonalization.h
External/Eigen/src/SparseCholesky/CMakeLists.txt
External/Eigen/src/SparseCholesky/SimplicialCholesky.h
External/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h
External/Eigen/src/SparseCore/AmbiVector.h
External/Eigen/src/SparseCore/CMakeLists.txt
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External/Eigen/src/SparseCore/MappedSparseMatrix.h
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External/Eigen/src/SparseCore/SparseColEtree.h
External/Eigen/src/SparseCore/SparseCwiseBinaryOp.h
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External/Eigen/src/SparseCore/SparseDot.h
External/Eigen/src/SparseCore/SparseFuzzy.h
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External/Eigen/src/SparseCore/SparseTriangularView.h
External/Eigen/src/SparseCore/SparseUtil.h
External/Eigen/src/SparseCore/SparseVector.h
External/Eigen/src/SparseCore/SparseView.h
External/Eigen/src/SparseCore/TriangularSolver.h
External/Eigen/src/SparseLU/CMakeLists.txt
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External/Eigen/src/SparseLU/SparseLU_column_dfs.h
External/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h
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External/Eigen/src/SparseQR/CMakeLists.txt
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External/nlopt/.gitignore
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External/nlopt/BUILD-MINGW32.sh
External/nlopt/BUILD-MINGW64.sh
External/nlopt/CMakeLists.txt
External/nlopt/COPYING
External/nlopt/COPYRIGHT
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External/nlopt/config.cmake.h.in
External/nlopt/config.h
External/nlopt/config.scons.h.in
External/nlopt/configure.ac
External/nlopt/nlopt.pc.in
External/nlopt/api/Makefile.am
External/nlopt/api/deprecated.c
External/nlopt/api/deprecated.cpp
External/nlopt/api/f77api.c
External/nlopt/api/f77api.cpp
External/nlopt/api/f77funcs.h
External/nlopt/api/f77funcs_.h
External/nlopt/api/general.c
External/nlopt/api/general.cpp
External/nlopt/api/nlopt-in.hpp
External/nlopt/api/nlopt-internal.h
External/nlopt/api/nlopt.3
External/nlopt/api/nlopt.h
External/nlopt/api/nlopt_minimize.3
External/nlopt/api/nlopt_minimize_constrained.3
External/nlopt/api/optimize.c
External/nlopt/api/optimize.cpp
External/nlopt/api/options.c
External/nlopt/api/options.cpp
External/nlopt/auglag/Makefile.am
External/nlopt/auglag/README
External/nlopt/auglag/auglag.c
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External/nlopt/bobyqa/COPYRIGHT
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External/nlopt/bobyqa/bobyqa.h
External/nlopt/cdirect/Makefile.am
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