LICENSE
MANIFEST.in
README.md
setup.cfg
setup.py
openpathsampling/.gitignore
openpathsampling/README.md
openpathsampling/__init__.py
openpathsampling/_installed_version.py
openpathsampling/bias_function.py
openpathsampling/collectivevariable.py
openpathsampling/deprecations.py
openpathsampling/ensemble.py
openpathsampling/integration_tools.py
openpathsampling/logging.conf
openpathsampling/movechange.py
openpathsampling/ops_logging.py
openpathsampling/pathmover.py
openpathsampling/pathmover_inout.py
openpathsampling/progress.py
openpathsampling/range_logic.py
openpathsampling/rng.py
openpathsampling/sample.py
openpathsampling/shooting.py
openpathsampling/snapshot_modifier.py
openpathsampling/step_visualizer_2D.py
openpathsampling/tools.py
openpathsampling/treelogic.py
openpathsampling/version.py
openpathsampling/visualize.py
openpathsampling/volume.py
openpathsampling.egg-info/PKG-INFO
openpathsampling.egg-info/SOURCES.txt
openpathsampling.egg-info/dependency_links.txt
openpathsampling.egg-info/requires.txt
openpathsampling.egg-info/top_level.txt
openpathsampling/analysis/.gitignore
openpathsampling/analysis/__init__.py
openpathsampling/analysis/channel_analysis.py
openpathsampling/analysis/ensemble_representation.py
openpathsampling/analysis/path_histogram.py
openpathsampling/analysis/reactive_flux_analysis.py
openpathsampling/analysis/replica_network.py
openpathsampling/analysis/shooting_point_analysis.py
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openpathsampling/analysis/trajectory_transition_analysis.py
openpathsampling/analysis/tis/__init__.py
openpathsampling/analysis/tis/core.py
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openpathsampling/analysis/tis/flux.py
openpathsampling/analysis/tis/misc.py
openpathsampling/analysis/tis/standard_analysis.py
openpathsampling/beta/__init__.py
openpathsampling/beta/hooks.py
openpathsampling/collectivevariables/README.md
openpathsampling/collectivevariables/__init__.py
openpathsampling/collectivevariables/plumed_wrapper.py
openpathsampling/engines/__init__.py
openpathsampling/engines/delayedinterrupt.py
openpathsampling/engines/dynamics_engine.py
openpathsampling/engines/external_engine.py
openpathsampling/engines/snapshot.py
openpathsampling/engines/topology.py
openpathsampling/engines/trajectory.py
openpathsampling/engines/external_snapshots/README.md
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openpathsampling/engines/external_snapshots/snapshot.py
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openpathsampling/engines/features/base.py
openpathsampling/engines/features/box_vectors.py
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openpathsampling/engines/features/engine.py
openpathsampling/engines/features/kinetics.py
openpathsampling/engines/features/numpydoctools.py
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openpathsampling/engines/features/topology.py
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openpathsampling/engines/gromacs/__init__.py
openpathsampling/engines/gromacs/engine.py
openpathsampling/engines/openmm/__init__.py
openpathsampling/engines/openmm/engine.py
openpathsampling/engines/openmm/snapshot.py
openpathsampling/engines/openmm/tools.py
openpathsampling/engines/openmm/topology.py
openpathsampling/engines/openmm/features/__init__.py
openpathsampling/engines/openmm/features/instantaneous_temperature.py
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openpathsampling/engines/toy/__init__.py
openpathsampling/engines/toy/engine.py
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openpathsampling/engines/toy/features/__init__.py
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openpathsampling/ensembles/README.md
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openpathsampling/experimental/README.md
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openpathsampling/experimental/simstore/serialization.py
openpathsampling/experimental/simstore/serialization_helpers.py
openpathsampling/experimental/simstore/sql_backend.py
openpathsampling/experimental/simstore/storable_functions.py
openpathsampling/experimental/simstore/storage.py
openpathsampling/experimental/simstore/tags_table.py
openpathsampling/experimental/simstore/test_attribute_handlers.py
openpathsampling/experimental/simstore/test_backend.py
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openpathsampling/experimental/simstore/test_custom_json.py
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openpathsampling/experimental/simstore/test_serialization.py
openpathsampling/experimental/simstore/test_serialization_helpers.py
openpathsampling/experimental/simstore/test_sql_backend.py
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openpathsampling/experimental/simstore/test_storage.py
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openpathsampling/experimental/simstore/tools.py
openpathsampling/experimental/simstore/type_ident.py
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openpathsampling/experimental/simstore/wrapper.py
openpathsampling/experimental/simstore/regressions/README.md
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openpathsampling/experimental/storage/__init__.py
openpathsampling/experimental/storage/collective_variables.py
openpathsampling/experimental/storage/mdtraj_json.py
openpathsampling/experimental/storage/monkey_patches.py
openpathsampling/experimental/storage/ops_storage.py
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openpathsampling/experimental/storage/test_collective_variables.py
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openpathsampling/high_level/__init__.py
openpathsampling/high_level/interface_set.py
openpathsampling/high_level/move_scheme.py
openpathsampling/high_level/move_strategy.py
openpathsampling/high_level/ms_outer_interface.py
openpathsampling/high_level/network.py
openpathsampling/high_level/part_in_b_tps.py
openpathsampling/high_level/transition.py
openpathsampling/netcdfplus/__init__.py
openpathsampling/netcdfplus/attribute.py
openpathsampling/netcdfplus/base.py
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openpathsampling/netcdfplus/chaindict.py
openpathsampling/netcdfplus/dictify.py
openpathsampling/netcdfplus/netcdfplus.py
openpathsampling/netcdfplus/proxy.py
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openpathsampling/netcdfplus/version.py
openpathsampling/netcdfplus/stores/__init__.py
openpathsampling/netcdfplus/stores/attribute.py
openpathsampling/netcdfplus/stores/dict.py
openpathsampling/netcdfplus/stores/indexed.py
openpathsampling/netcdfplus/stores/named.py
openpathsampling/netcdfplus/stores/object.py
openpathsampling/netcdfplus/stores/value.py
openpathsampling/netcdfplus/stores/variable.py
openpathsampling/numerics/__init__.py
openpathsampling/numerics/histogram.py
openpathsampling/numerics/lookup_function.py
openpathsampling/numerics/resampling_statistics.py
openpathsampling/numerics/wham.py
openpathsampling/pathmovers/README.md
openpathsampling/pathmovers/__init__.py
openpathsampling/pathmovers/move_schemes.py
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openpathsampling/pathsimulators/__init__.py
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openpathsampling/pathsimulators/reactive_flux.py
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openpathsampling/resources/debug_logging.conf
openpathsampling/resources/engine_debug.conf
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openpathsampling/storage/__init__.py
openpathsampling/storage/distributed.py
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openpathsampling/storage/stores/collectivevariable.py
openpathsampling/storage/stores/mcstep.py
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openpathsampling/strategies/__init__.py
openpathsampling/tests/.gitignore
openpathsampling/tests/__init__.py
openpathsampling/tests/test_api.py
openpathsampling/tests/test_attribute.py
openpathsampling/tests/test_bias_function.py
openpathsampling/tests/test_channel_analysis.py
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openpathsampling/tests/test_toy_features.py
openpathsampling/tests/test_trajectory.py
openpathsampling/tests/test_trajectory_transition_analysis.py
openpathsampling/tests/test_transitions.py
openpathsampling/tests/test_visit_all_states.py
openpathsampling/tests/test_volume.py
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openpathsampling/tests/external_engine/Makefile
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