openpathsampling.AcceptedSampleMoveChange
openpathsampling.AllInXEnsemble
openpathsampling.AllOutXEnsemble
openpathsampling.AnalysisStorage
openpathsampling.BackwardExtendMover
openpathsampling.BackwardFirstTwoWayShootingMover
openpathsampling.BackwardShootMover
openpathsampling.engines.BaseSnapshot
openpathsampling.BiasEnsembleTable
openpathsampling.BiasFunction
openpathsampling.BiasLookupFunction
openpathsampling.Bootstrapping
openpathsampling.CVDefinedVolume
openpathsampling.CallableCV
openpathsampling.ChannelAnalysis
openpathsampling.CollectiveVariable
openpathsampling.CommittorSimulation
openpathsampling.ConditionalMover
openpathsampling.ConditionalSequentialMoveChange
openpathsampling.ConditionalSequentialMover
openpathsampling.CoordinateFunctionCV
openpathsampling.CoordinateGeneratorCV
openpathsampling.DefaultScheme
openpathsampling.Details
openpathsampling.DirectSimulation
openpathsampling.EmptyEnsemble
openpathsampling.EmptyMoveChange
openpathsampling.EmptyVolume
openpathsampling.EngineMover
openpathsampling.Ensemble
openpathsampling.EnsembleCombination
openpathsampling.EnsembleFilterMover
openpathsampling.EnsembleHopMover
openpathsampling.FilterByEnsembleMoveChange
openpathsampling.FilterSamplesMoveChange
openpathsampling.FinalFrameSelector
openpathsampling.FinalSubtrajectorySelectMover
openpathsampling.FirstAllowedMover
openpathsampling.FirstFrameSelector
openpathsampling.FirstSubtrajectorySelectMover
openpathsampling.FixedLengthTPSNetwork
openpathsampling.FixedLengthTPSTransition
openpathsampling.ForwardExtendMover
openpathsampling.ForwardFirstTwoWayShootingMover
openpathsampling.ForwardShootMover
openpathsampling.FullBootstrapping
openpathsampling.FullEnsemble
openpathsampling.FullVolume
openpathsampling.FunctionCV
openpathsampling.GaussianBiasSelector
openpathsampling.GeneratorCV
openpathsampling.IdentityPathMover
openpathsampling.InVolumeCV
openpathsampling.InterfaceConstrainedSelector
openpathsampling.InterfaceSet
openpathsampling.IntersectionEnsemble
openpathsampling.IntersectionVolume
openpathsampling.KeepLastSampleMoveChange
openpathsampling.LastAllowedMover
openpathsampling.LengthEnsemble
openpathsampling.LockedMoveScheme
openpathsampling.MCStep
openpathsampling.MDTrajFunctionCV
openpathsampling.MISTISNetwork
openpathsampling.MSMBFeaturizerCV
openpathsampling.MSOuterTISInterface
openpathsampling.MSTISNetwork
openpathsampling.MinusInterfaceEnsemble
openpathsampling.MinusMover
openpathsampling.MoveChange
openpathsampling.MoveDetails
openpathsampling.MoveScheme
openpathsampling.NegatedEnsemble
openpathsampling.NoModification
openpathsampling.OneWayExtendMover
openpathsampling.OneWayShootingMoveScheme
openpathsampling.OneWayShootingMover
openpathsampling.OptionalEnsemble
openpathsampling.PartInBFixedLengthTPSNetwork
openpathsampling.PartInBFixedLengthTPSTransition
openpathsampling.PartInXEnsemble
openpathsampling.PartOutXEnsemble
openpathsampling.PartialAcceptanceSequentialMoveChange
openpathsampling.PartialAcceptanceSequentialMover
openpathsampling.PathDensityHistogram
openpathsampling.PathMover
openpathsampling.PathReversalMover
openpathsampling.PathReversalSet
openpathsampling.PathSampling
openpathsampling.PathSimulator
openpathsampling.PathSimulatorMoveChange
openpathsampling.PathSimulatorMover
openpathsampling.PeriodicCVDefinedVolume
openpathsampling.PeriodicVolumeInterfaceSet
openpathsampling.PrefixTrajectoryEnsemble
openpathsampling.PyEMMAFeaturizerCV
openpathsampling.RandomAllowedChoiceMover
openpathsampling.RandomChoiceMoveChange
openpathsampling.RandomChoiceMover
openpathsampling.RandomSubtrajectorySelectMover
openpathsampling.RandomVelocities
openpathsampling.RejectedMaxLengthSampleMoveChange
openpathsampling.RejectedNaNSampleMoveChange
openpathsampling.RejectedSampleMoveChange
openpathsampling.RelativeComplementVolume
openpathsampling.ReplicaExchangeMover
openpathsampling.ReplicaNetwork
openpathsampling.ReplicaNetworkGraph
openpathsampling.ReversedTrajectoryEnsemble
openpathsampling.SRTISBiasFromNetwork
openpathsampling.SRTISScheme
openpathsampling.Sample
openpathsampling.SampleDetails
openpathsampling.SampleMoveChange
openpathsampling.SampleMover
openpathsampling.SampleSet
openpathsampling.SelectionMover
openpathsampling.SequentialEnsemble
openpathsampling.SequentialMoveChange
openpathsampling.SequentialMover
openpathsampling.ShootFromSnapshotsSimulation
openpathsampling.ShootingPointAnalysis
openpathsampling.ShootingPointSelector
openpathsampling.SingleAtomVelocityDirectionModifier
openpathsampling.SingleFrameEnsemble
openpathsampling.SingleReplicaMinusMover
openpathsampling.SnapshotByCoordinateDict
openpathsampling.StateSwapMover
openpathsampling.StepVisualizer2D
openpathsampling.Storage
openpathsampling.SubMoveChange
openpathsampling.SubPathMover
openpathsampling.SubtrajectorySelectMover
openpathsampling.SuffixTrajectoryEnsemble
openpathsampling.SymmetricDifferenceVolume
openpathsampling.TISEnsemble
openpathsampling.TISTransition
openpathsampling.TPSNetwork
openpathsampling.TPSTransition
openpathsampling.engines.Trajectory
openpathsampling.TrajectorySegmentContainer
openpathsampling.TrajectoryTransitionAnalysis
openpathsampling.Transition
openpathsampling.TransitionNetwork
openpathsampling.TwoWayShootingMover
openpathsampling.UniformSelector
openpathsampling.UnionEnsemble
openpathsampling.UnionVolume
openpathsampling.VelocityDirectionModifier
openpathsampling.Volume
openpathsampling.VolumeCombination
openpathsampling.VolumeEnsemble
openpathsampling.VolumeInterfaceSet
openpathsampling.WrappedEnsemble
openpathsampling.condense_repeats
openpathsampling.git_HEAD
openpathsampling.join_ensembles
openpathsampling.join_volumes
openpathsampling.resources_directory
openpathsampling.trace_ensembles_for_replica
openpathsampling.trace_replicas_for_ensemble
openpathsampling.analysis.PathHistogram
openpathsampling.netcdfplus.StorableNamedObject
openpathsampling.numerics.SparseHistogram
openpathsampling.analysis.tis.ConditionalTransitionProbability
openpathsampling.analysis.tis.DictFlux
openpathsampling.analysis.tis.EnsembleHistogrammer
openpathsampling.analysis.tis.FullHistogramMaxLambdas
openpathsampling.analysis.tis.MinusMoveFlux
openpathsampling.analysis.tis.MultiEnsembleSamplingAnalyzer
openpathsampling.analysis.tis.PathLengthHistogrammer
openpathsampling.analysis.tis.StandardTISAnalysis
openpathsampling.analysis.tis.StandardTransitionProbability
openpathsampling.analysis.tis.TISAnalysis
openpathsampling.analysis.tis.TotalCrossingProbability
openpathsampling.analysis.tis.TransitionDictResults
openpathsampling.analysis.tis.flux_matrix_pd
openpathsampling.numerics.LookupFunction
openpathsampling.netcdfplus.ObjectJSON
openpathsampling.netcdfplus.ObjectStore
openpathsampling.netcdfplus.PseudoAttribute
openpathsampling.netcdfplus.WeakKeyCache
openpathsampling.netcdfplus.create_to_dict
openpathsampling.engines.openmm.trajectory_to_mdtraj
openpathsampling.netcdfplus.LoaderProxy
openpathsampling.engines.DynamicsEngine
openpathsampling.engines.EngineError
openpathsampling.engines.EngineMaxLengthError
openpathsampling.engines.EngineNaNError
openpathsampling.engines.openmm.NoEngine
openpathsampling.engines.openmm.SnapshotDescriptor
openpathsampling.engines.SnapshotFactory
openpathsampling.engines.Topology
openpathsampling.netcdfplus.DelayedLoader
openpathsampling.netcdfplus.WeakLRUCache
openpathsampling.netcdfplus.StorableObject
openpathsampling.engines.openmm.Engine
openpathsampling.engines.openmm.MDSnapshot
openpathsampling.engines.openmm.Snapshot
openpathsampling.engines.openmm.empty_snapshot_from_openmm_topology
openpathsampling.engines.openmm.snapshot_from_pdb
openpathsampling.engines.openmm.snapshot_from_testsystem
openpathsampling.engines.openmm.to_openmm_topology
openpathsampling.engines.openmm.trajectory_from_mdtraj
openpathsampling.engines.toy.Engine
openpathsampling.engines.toy.Gaussian
openpathsampling.engines.toy.HarmonicOscillator
openpathsampling.engines.toy.LangevinBAOABIntegrator
openpathsampling.engines.toy.LeapfrogVerletIntegrator
openpathsampling.engines.toy.LinearSlope
openpathsampling.engines.toy.OuterWalls
openpathsampling.engines.toy.PES
openpathsampling.engines.toy.PES_Add
openpathsampling.engines.toy.PES_Combination
openpathsampling.engines.toy.PES_Sub
openpathsampling.engines.toy.Snapshot
openpathsampling.engines.toy.Topology
openpathsampling.netcdfplus.Cache
openpathsampling.netcdfplus.CallablePseudoAttribute
openpathsampling.netcdfplus.DictStore
openpathsampling.netcdfplus.FunctionPseudoAttribute
openpathsampling.netcdfplus.GeneratorPseudoAttribute
openpathsampling.netcdfplus.ImmutableDictStore
openpathsampling.netcdfplus.IndexedObjectStore
openpathsampling.netcdfplus.LRUCache
openpathsampling.netcdfplus.LRUChunkLoadingCache
openpathsampling.netcdfplus.MaxCache
openpathsampling.netcdfplus.NamedObjectStore
openpathsampling.netcdfplus.NetCDFPlus
openpathsampling.netcdfplus.NoCache
openpathsampling.netcdfplus.PseudoAttributeStore
openpathsampling.netcdfplus.StorableObjectJSON
openpathsampling.netcdfplus.UUIDObjectJSON
openpathsampling.netcdfplus.UniqueNamedObjectStore
openpathsampling.netcdfplus.ValueStore
openpathsampling.netcdfplus.VariableStore
openpathsampling.netcdfplus.WeakValueCache
openpathsampling.netcdfplus.lazy_loading_attributes
openpathsampling.netcdfplus.with_timing_logging
openpathsampling.strategies.AllSetRepExStrategy
openpathsampling.strategies.EnsembleHopStrategy
openpathsampling.strategies.ForwardShootingStrategy
openpathsampling.strategies.LevelLabels
openpathsampling.strategies.MinusMoveStrategy
openpathsampling.strategies.MoveStrategy
openpathsampling.strategies.NearestNeighborRepExStrategy
openpathsampling.strategies.NthNearestNeighborRepExStrategy
openpathsampling.strategies.OneWayShootingStrategy
openpathsampling.strategies.OrganizeByEnsembleStrategy
openpathsampling.strategies.OrganizeByMoveGroupStrategy
openpathsampling.strategies.PathReversalStrategy
openpathsampling.strategies.PoorSingleReplicaStrategy
openpathsampling.strategies.ReplicaExchangeStrategy
openpathsampling.strategies.SelectedPairsRepExStrategy
openpathsampling.strategies.SingleEnsembleMoveStrategy
openpathsampling.strategies.SingleReplicaMinusMoveStrategy
openpathsampling.strategies.StateSwapRepExStrategy
openpathsampling.strategies.StrategyLevels
openpathsampling.strategies.TwoWayShootingStrategy
openpathsampling.strategies.levels
openpathsampling.strategies.most_common_value
openpathsampling.numerics.Histogram
openpathsampling.numerics.Histogrammer
openpathsampling.numerics.WHAM
openpathsampling.numerics.histograms_to_pandas_dataframe
openpathsampling.numerics.BlockResampling
openpathsampling.numerics.HistogramPlotter2D
openpathsampling.numerics.LookupFunctionGroup
openpathsampling.numerics.ResamplingStatistics
openpathsampling.numerics.VoxelLookupFunction
