.coveragerc
.dockerignore
.gitignore
.pre-commit-config.yaml
Dockerfile
LICENSE
MANIFEST.in
README.md
mkdocs.yaml
pyproject.toml
requirements.txt
.github/AGENTS.md
.github/copilot-instructions.md
.github/agents/agent.md
.github/workflows/build_docs.yml
.github/workflows/publish.yml
.github/workflows/run_tests.yml
docs/api_reference.md
docs/basic_example.ipynb
docs/best_practices.md
docs/changelog.md
docs/cli.md
docs/data_inputs.md
docs/example_coverage.md
docs/faq.md
docs/figure_workflows.md
docs/index.md
docs/installation.md
docs/quickstart.md
docs/quickstart_tracks.md
docs/recipes.md
docs/simple_overlays.ipynb
docs/track_aliases.md
docs/track_catalog.md
docs/troubleshooting.md
docs/assets/plotnado-logo.svg
examples/README.md
examples/advanced_features.py
examples/basic_figure.py
examples/run_examples.py
examples/quickstart/01_first_plot.py
examples/quickstart/02_aliases_and_options.py
examples/recipes/01_autoscale_overlay_highlight.py
examples/recipes/02_theme_labels_toml.py
examples/recipes/03_gene_label_strategies.py
examples/tracks/01_bigwig_styles.py
examples/tracks/02_bed_and_narrowpeak.py
examples/tracks/03_links_annotations.py
plotnado/__init__.py
plotnado/_kwargs.py
plotnado/_version.py
plotnado/figure.py
plotnado/figure.pyi
plotnado/py.typed
plotnado/theme.py
plotnado.egg-info/PKG-INFO
plotnado.egg-info/SOURCES.txt
plotnado.egg-info/dependency_links.txt
plotnado.egg-info/entry_points.txt
plotnado.egg-info/requires.txt
plotnado.egg-info/top_level.txt
plotnado/cli/__init__.py
plotnado/cli/cli.py
plotnado/data/__init__.py
plotnado/data/gene_bed_files/genes.json
plotnado/data/gene_bed_files/hg38_genes.bed
plotnado/data/gene_bed_files/hg38_genes.bed.gz
plotnado/data/gene_bed_files/hg38_genes.bed.gz.tbi
plotnado/tracks/__init__.py
plotnado/tracks/_meta.py
plotnado/tracks/aesthetics.py
plotnado/tracks/annotations.py
plotnado/tracks/axis.py
plotnado/tracks/base.py
plotnado/tracks/bed.py
plotnado/tracks/bigwig.py
plotnado/tracks/bigwig_collection.py
plotnado/tracks/bigwig_diff.py
plotnado/tracks/cooler_track.py
plotnado/tracks/enums.py
plotnado/tracks/genes.py
plotnado/tracks/highlight.py
plotnado/tracks/links.py
plotnado/tracks/overlay.py
plotnado/tracks/peaks.py
plotnado/tracks/quantnado.py
plotnado/tracks/region.py
plotnado/tracks/scalebar.py
plotnado/tracks/scaling.py
plotnado/tracks/schemas.py
plotnado/tracks/spacer.py
plotnado/tracks/utils.py
scripts/gen_ref_pages.py
scripts/generate_figure_overloads.py
scripts/generate_figure_stub.py
scripts/generate_kwargs.py
scripts/mkdocs_hooks.py
tests/conftest.py
tests/test_aesthetics.py
tests/test_axis.py
tests/test_bed_track_memory.py
tests/test_bedgraph_dataframe.py
tests/test_bigwig_collection.py
tests/test_bigwig_diff.py
tests/test_bigwig_track.py
tests/test_cooler_track.py
tests/test_figure_refactor.py
tests/test_generated_figure_overloads.py
tests/test_generated_figure_stub.py
tests/test_generated_kwargs.py
tests/test_genes.py
tests/test_genomic_region.py
tests/test_overlay_track.py
tests/test_quantnado_tracks.py
tests/test_scale_bar.py
tests/test_scaling.py
tests/test_track_labeller.py
tests/test_utils_io.py
tests/utils.py
tests/data/test_chr21.gtf
tests/data/test_chr21.gtf.gz
tests/data/test_chr21.gtf.gz.tbi
tests/data/test_chr21_bed12.bed
tests/data/test_chr21_bed12.bed.gz
tests/data/test_chr21_bed12.bed.gz.tbi
tools/fix_conflicts.py