MANIFEST.in
README.rst
config.ini
setup.py
tree2gd_main.py
Tree2gd.egg-info/PKG-INFO
Tree2gd.egg-info/SOURCES.txt
Tree2gd.egg-info/dependency_links.txt
Tree2gd.egg-info/entry_points.txt
Tree2gd.egg-info/requires.txt
Tree2gd.egg-info/top_level.txt
example_data/Alyrata.cds
example_data/Alyrata.pep
example_data/Athaliana.cds
example_data/Athaliana.pep
example_data/Brapa.cds
example_data/Brapa.pep
example_data/Cpapaya.cds
example_data/Cpapaya.pep
example_data/Crubella.cds
example_data/Crubella.pep
example_data/Esalsugineum.cds
example_data/Esalsugineum.pep
example_data/Tparvula.cds
example_data/Tparvula.pep
example_data/config.ini
example_data/example.tree
software/Epal2nal.pl
software/KaKs_Calculator
software/ParaAT.pl
software/PhyloMCL
software/Tree2GD
software/Tree2GD_draw.R
software/axt2one-line.py
software/calculate_4DTV_correction.pl
software/diamond
software/dolloparsimony
software/iqtree
software/muscle
software/seqkit
software/tree2gd_src/ArrayIndexOutOfBoundsException.h
software/tree2gd_src/Methods.h
software/tree2gd_src/StringTokenizer.h
software/tree2gd_src/Tree2GD
software/tree2gd_src/Tree2GD.cpp
software/tree2gd_src/tree.h
tree2gd/__init__.py
tree2gd/blastp.py
tree2gd/dollop.py
tree2gd/kaks.py
tree2gd/mcl.py
tree2gd/plot.py
tree2gd/seq.py
tree2gd/tree2gd.py
tree2gd/wgd.py