.gitignore
AUTHORS.rst
LICENSE.md
README.md
codecov.yml
conda-env.yml
ignore_words.txt
pyproject.toml
setup.py
tox.ini
.github/pull_request_template.md
.github/ISSUE_TEMPLATE/bug-report.yml
.github/ISSUE_TEMPLATE/config.yml
.github/ISSUE_TEMPLATE/dataset-request.yml
.github/ISSUE_TEMPLATE/documention-request.yml
.github/ISSUE_TEMPLATE/feature-request.yml
.github/ISSUE_TEMPLATE/marker-request.yml
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.github/workflows/docs-preview.yml
.github/workflows/docs.yml
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docs/Makefile
docs/builtin.rst
docs/conf.py
docs/contribution.rst
docs/faq.rst
docs/index.rst
docs/installation.rst
docs/links.inc
docs/maintaining.rst
docs/redirect.html
docs/whats_new.rst
docs/_static/css/custom.css
docs/_static/js/custom.js
docs/_templates/versions.html
docs/api/api.rst
docs/api/configs.rst
docs/api/data.rst
docs/api/datagrabbers.rst
docs/api/datareaders.rst
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docs/api/markers.rst
docs/api/pipeline.rst
docs/api/preprocessing.rst
docs/api/stats.rst
docs/api/storage.rst
docs/api/testing.rst
docs/api/utils.rst
docs/changes/contributors.inc
docs/changes/latest.inc
docs/extending/datagrabber.rst
docs/extending/extension.rst
docs/extending/index.rst
docs/extending/marker.rst
docs/images/junifer_logo.png
docs/images/pipeline/pipeline.001.png
docs/images/pipeline/pipeline.002.png
docs/sphinxext/gh_substitutions.py
docs/understanding/data.rst
docs/understanding/datagrabber.rst
docs/understanding/datareader.rst
docs/understanding/index.rst
docs/understanding/marker.rst
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docs/using/codeless.rst
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docs/using/queueing.rst
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examples/README.rst
examples/norun_hcpfc_pearson.py
examples/norun_ukbvm_gmd.py
examples/run_compute_parcel_mean.py
examples/run_datagrabber_bids_datalad.py
examples/run_ets_rss_marker.py
examples/run_junifer_julearn.py
examples/run_run_gmd_mean.py
examples/yamls/gmd_mean.yaml
examples/yamls/gmd_mean_htcondor.yaml
examples/yamls/ukb_gmd_mean.yaml
junifer/__init__.py
junifer/_version.py
junifer/stats.py
junifer.egg-info/PKG-INFO
junifer.egg-info/SOURCES.txt
junifer.egg-info/dependency_links.txt
junifer.egg-info/entry_points.txt
junifer.egg-info/requires.txt
junifer.egg-info/top_level.txt
junifer/api/__init__.py
junifer/api/cli.py
junifer/api/decorators.py
junifer/api/functions.py
junifer/api/parser.py
junifer/api/utils.py
junifer/api/res/run_conda.sh
junifer/api/tests/test_api_utils.py
junifer/api/tests/test_cli.py
junifer/api/tests/test_functions.py
junifer/api/tests/test_parser.py
junifer/api/tests/data/gmd_mean.yaml
junifer/api/tests/data/gmd_mean_htcondor.yaml
junifer/configs/__init__.py
junifer/configs/juseless/__init__.py
junifer/configs/juseless/datagrabbers/__init__.py
junifer/configs/juseless/datagrabbers/aomic_id1000_vbm.py
junifer/configs/juseless/datagrabbers/camcan_vbm.py
junifer/configs/juseless/datagrabbers/ixi_vbm.py
junifer/configs/juseless/datagrabbers/ucla.py
junifer/configs/juseless/datagrabbers/ukb_vbm.py
junifer/configs/juseless/datagrabbers/tests/test_aomic_id1000_vbm.py
junifer/configs/juseless/datagrabbers/tests/test_camcan_vbm.py
junifer/configs/juseless/datagrabbers/tests/test_ixi_vbm.py
junifer/configs/juseless/datagrabbers/tests/test_ucla.py
junifer/configs/juseless/datagrabbers/tests/test_ukb_vbm.py
junifer/configs/tests/test_juseless.py
junifer/data/__init__.py
junifer/data/coordinates.py
junifer/data/masks.py
junifer/data/parcellations.py
junifer/data/utils.py
junifer/data/VOIs/meta/CogAC_VOIs.txt
junifer/data/VOIs/meta/CogAR_VOIs.txt
junifer/data/VOIs/meta/DMNBuckner_VOIs.txt
junifer/data/VOIs/meta/Empathy_VOIs.txt
junifer/data/VOIs/meta/Motor_VOIs.txt
junifer/data/VOIs/meta/MultiTask_VOIs.txt
junifer/data/VOIs/meta/PhysioStress_VOIs.txt
junifer/data/VOIs/meta/Rew_VOIs.txt
junifer/data/VOIs/meta/Somatosensory_VOIs.txt
junifer/data/VOIs/meta/ToM_VOIs.txt
junifer/data/VOIs/meta/VigAtt_VOIs.txt
junifer/data/VOIs/meta/WM_VOIs.txt
junifer/data/VOIs/meta/eMDN_VOIs.txt
junifer/data/VOIs/meta/eSAD_VOIs.txt
junifer/data/VOIs/meta/extDMN_VOIs.txt
junifer/data/masks/vickery-patil/CAT12_IXI555_MNI152_TMP_GS_GMprob0.2_clean.nii.gz
junifer/data/masks/vickery-patil/CAT12_IXI555_MNI152_TMP_GS_GMprob0.2_clean_3mm.nii.gz
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junifer/data/tests/test_coordinates.py
junifer/data/tests/test_data_utils.py
junifer/data/tests/test_masks.py
junifer/data/tests/test_parcellations.py
junifer/datagrabber/__init__.py
junifer/datagrabber/base.py
junifer/datagrabber/datalad_base.py
junifer/datagrabber/hcp.py
junifer/datagrabber/multiple.py
junifer/datagrabber/pattern.py
junifer/datagrabber/pattern_datalad.py
junifer/datagrabber/utils.py
junifer/datagrabber/aomic/__init__.py
junifer/datagrabber/aomic/id1000.py
junifer/datagrabber/aomic/piop1.py
junifer/datagrabber/aomic/piop2.py
junifer/datagrabber/aomic/tests/test_id1000.py
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junifer/datagrabber/tests/test_hcp.py
junifer/datagrabber/tests/test_multiple.py
junifer/datagrabber/tests/test_pattern.py
junifer/datagrabber/tests/test_pattern_datalad.py
junifer/datareader/__init__.py
junifer/datareader/default.py
junifer/datareader/tests/test_default_reader.py
junifer/external/__init__.py
junifer/external/nilearn/__init__.py
junifer/external/nilearn/junifer_nifti_spheres_masker.py
junifer/external/nilearn/tests/test_junifer_nifti_spheres_masker.py
junifer/markers/__init__.py
junifer/markers/base.py
junifer/markers/collection.py
junifer/markers/crossparcellation_functional_connectivity.py
junifer/markers/ets_rss.py
junifer/markers/functional_connectivity_parcels.py
junifer/markers/functional_connectivity_spheres.py
junifer/markers/parcel_aggregation.py
junifer/markers/sphere_aggregation.py
junifer/markers/utils.py
junifer/markers/tests/test_collection.py
junifer/markers/tests/test_crossparcellation_functional_connectivity.py
junifer/markers/tests/test_ets_rss.py
junifer/markers/tests/test_functional_connectivity_parcels.py
junifer/markers/tests/test_functional_connectivity_spheres.py
junifer/markers/tests/test_marker_utils.py
junifer/markers/tests/test_markers_base.py
junifer/markers/tests/test_parcel_aggregation.py
junifer/markers/tests/test_sphere_aggregation.py
junifer/pipeline/__init__.py
junifer/pipeline/pipeline_step_mixin.py
junifer/pipeline/registry.py
junifer/pipeline/update_meta_mixin.py
junifer/pipeline/tests/test_pipeline_step_mixin.py
junifer/pipeline/tests/test_registry.py
junifer/pipeline/tests/test_update_meta_mixin.py
junifer/preprocess/__init__.py
junifer/preprocess/base.py
junifer/preprocess/confounds/__init__.py
junifer/preprocess/confounds/fmriprep_confound_remover.py
junifer/preprocess/confounds/tests/test_fmriprep_confound_remover.py
junifer/preprocess/tests/test_preprocess_base.py
junifer/storage/__init__.py
junifer/storage/base.py
junifer/storage/pandas_base.py
junifer/storage/sqlite.py
junifer/storage/utils.py
junifer/storage/tests/test_pandas_base.py
junifer/storage/tests/test_sqlite.py
junifer/storage/tests/test_storage_base.py
junifer/storage/tests/test_utils.py
junifer/testing/__init__.py
junifer/testing/datagrabbers.py
junifer/testing/registry.py
junifer/testing/utils.py
junifer/testing/data/sub-0001_task-anticipation_acq-seq_desc-confounds_regressors.tsv
junifer/testing/tests/test_oasisvmbtesting_datagrabber.py
junifer/testing/tests/test_partlycloudytesting_datagrabber.py
junifer/testing/tests/test_spmauditory_datagrabber.py
junifer/testing/tests/test_testing_registry.py
junifer/tests/test_main.py
junifer/tests/test_stats.py
junifer/utils/__init__.py
junifer/utils/fs.py
junifer/utils/logging.py
junifer/utils/tests/test_fs.py
junifer/utils/tests/test_logging.py
tools/create_aomic1000_example_dataset.py
tools/create_aomicpiop1_example_dataset.py
tools/create_aomicpiop2_example_dataset.py
tools/create_bids_example_dataset.py
tools/create_bids_example_dataset_sessions.py
tools/create_hcp1200_example_dataset.py