LICENSE.txt
MANIFEST.in
README.md
setup.py
lhc/__init__.py
lhc/math.py
lhc/order.py
lhc/binf/__init__.py
lhc/binf/genetic_code.py
lhc/binf/identifier.py
lhc/binf/iupac.py
lhc/binf/kmer.py
lhc/binf/skew.py
lhc/binf/align/__init__.py
lhc/binf/align/aligner.py
lhc/binf/align/alignment.py
lhc/binf/align/character_map.py
lhc/binf/align/global_alignment.py
lhc/binf/align/local_alignment.py
lhc/binf/align/score.py
lhc/binf/align/semiglobal_alignment.py
lhc/binf/alignment/__init__.py
lhc/binf/alignment/__main__.py
lhc/binf/alignment/tools/__init__.py
lhc/binf/alignment/tools/diff.py
lhc/binf/alignment/tools/strand.py
lhc/binf/genomic_coordinate/__init__.py
lhc/binf/genomic_coordinate/genomic_interval.py
lhc/binf/genomic_coordinate/genomic_position.py
lhc/binf/genomic_coordinate/nested_genomic_interval.py
lhc/binf/loci/__init__.py
lhc/binf/loci/__main__.py
lhc/binf/loci/make_loci.py
lhc/binf/loci/tools/__init__.py
lhc/binf/loci/tools/closest.py
lhc/binf/loci/tools/extend.py
lhc/binf/loci/tools/filter.py
lhc/binf/loci/tools/flank.py
lhc/binf/loci/tools/generate.py
lhc/binf/loci/tools/kmer_filter.py
lhc/binf/loci/tools/query.py
lhc/binf/loci/tools/shear.py
lhc/binf/loci/tools/stats.py
lhc/binf/loci/tools/view.py
lhc/binf/sequence/__init__.py
lhc/binf/sequence/__main__.py
lhc/binf/sequence/dicodonshuffle.py
lhc/binf/sequence/reverse_complement.py
lhc/binf/sequence/sequence_generator.py
lhc/binf/sequence/digen/__init__.py
lhc/binf/sequence/digen/digen.py
lhc/binf/sequence/digen/setup.py
lhc/binf/sequence/tools/__init__.py
lhc/binf/sequence/tools/extract.py
lhc/binf/sequence/tools/filter.py
lhc/binf/sequence/tools/get.py
lhc/binf/sequence/tools/split.py
lhc/binf/sequence/tools/stat.py
lhc/binf/sequence/tools/view.py
lhc/collections/__init__.py
lhc/collections/inorder_access_interval_set.py
lhc/collections/inorder_access_set.py
lhc/collections/interval_map.py
lhc/collections/interval_set.py
lhc/collections/multi_dimension_map.py
lhc/collections/tracked_map.py
lhc/collections/tracked_set.py
lhc/filetools/__init__.py
lhc/filetools/filepool.py
lhc/filetools/shared_connection.py
lhc/filetools/shared_file.py
lhc/filetools/shared_filepool.py
lhc/graph/__init__.py
lhc/graph/graph.py
lhc/graph/hyper_graph.py
lhc/graph/n_partite_graph.py
lhc/indices/__init__.py
lhc/indices/tbi.py
lhc/indices/tracked_index.py
lhc/interval/__init__.py
lhc/interval/binner.py
lhc/interval/interval.py
lhc/intervaltools/__init__.py
lhc/intervaltools/set.py
lhc/io/__init__.py
lhc/io/cut.py
lhc/io/file.py
lhc/io/alignment/__init__.py
lhc/io/fasta/__init__.py
lhc/io/fasta/__main__.py
lhc/io/fasta/index.py
lhc/io/fasta/inorder_access_set.py
lhc/io/fasta/iterator.py
lhc/io/fasta/tools/__init__.py
lhc/io/fasta/tools/index.py
lhc/io/fasta/tools/wrap.py
lhc/io/fastq/__init__.py
lhc/io/fastq/__main__.py
lhc/io/fastq/iterator.py
lhc/io/fastq/tools/__init__.py
lhc/io/fastq/tools/filter.py
lhc/io/fastq/tools/split.py
lhc/io/gbk/__init__.py
lhc/io/gbk/__main__.py
lhc/io/gbk/iterator.py
lhc/io/gbk/sequence_set.py
lhc/io/gbk/tokeniser.py
lhc/io/gbk/tools/__init__.py
lhc/io/gbk/tools/extract.py
lhc/io/gbk/tools/split.py
lhc/io/loci/__init__.py
lhc/io/loci/bed.py
lhc/io/loci/gff.py
lhc/io/loci/gtf.py
lhc/io/loci/loci_file.py
lhc/io/loci/paf.py
lhc/io/loci/region.py
lhc/io/loci/repeat_masker.py
lhc/io/loci/sam.py
lhc/io/maf/__init__.py
lhc/io/maf/__main__.py
lhc/io/maf/index.py
lhc/io/maf/iterator.py
lhc/io/txt/__init__.py
lhc/io/txt/__main__.py
lhc/io/txt/filter.py
lhc/io/txt/format_parser.py
lhc/io/txt/formatters.py
lhc/io/txt/indexed_set.py
lhc/io/txt/iterator.py
lhc/io/txt/set_.py
lhc/io/txt/tools/__init__.py
lhc/io/txt/tools/check_format.py
lhc/io/txt/tools/compress.py
lhc/io/txt/tools/decompress.py
lhc/io/txt/tools/fetch.py
lhc/io/txt/tools/index.py
lhc/io/txt/tools/join.py
lhc/io/txt/tools/sort.py
lhc/io/vcf/__init__.py
lhc/io/vcf/__main__.py
lhc/io/vcf/index.py
lhc/io/vcf/iterator.py
lhc/io/vcf/merger.py
lhc/io/vcf/set_.py
lhc/io/vcf/tools/__init__.py
lhc/io/vcf/tools/compare.py
lhc/io/vcf/tools/difference.py
lhc/io/vcf/tools/filter.py
lhc/io/vcf/tools/index.py
lhc/io/vcf/tools/merge.py
lhc/io/vcf/tools/sample.py
lhc/io/vcf/tools/shift.py
lhc/io/vcf/tools/sort.py
lhc/io/vcf/tools/split_alt.py
lhc/io/vcf/tools/trim_alt.py
lhc/itertools/__init__.py
lhc/itertools/chunked_iterator.py
lhc/itertools/merge_sorted.py
lhc/itertools/sorted_iterator_merger.py
lhc/misc/__init__.py
lhc/misc/performance_measures.py
lhc/misc/string.py
lhc/misc/tools.py
lhc/random/__init__.py
lhc/random/reservoir.py
lhc/tools/__init__.py
lhc/tools/sorter.py
lhc/tools/tokeniser.py
lhc_python.egg-info/PKG-INFO
lhc_python.egg-info/SOURCES.txt
lhc_python.egg-info/dependency_links.txt
lhc_python.egg-info/requires.txt
lhc_python.egg-info/top_level.txt
lib/bitap/bitap.cpp
lib/bitap/bitap.h
lib/bitap/bitapmodule.cpp