Metadata-Version: 2.1
Name: isatools
Version: 0.12.2
Summary: Metadata tracking tools help to manage an increasingly diverse set of life science, environmental and biomedical experiments
Home-page: https://github.com/ISA-tools/isa-api
Author: ISA Infrastructure Team
Author-email: isatools@googlegroups.com
License: UNKNOWN
Platform: UNKNOWN
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Science/Research
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: System Administrators
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Description-Content-Type: text/markdown
Requires-Dist: numpy (~=1.20.2)
Requires-Dist: jsonschema (~=3.2.0)
Requires-Dist: pandas (~=1.2.4)
Requires-Dist: networkx (~=2.5.1)
Requires-Dist: lxml (~=4.6.3)
Requires-Dist: requests (~=2.25.1)
Requires-Dist: chardet (~=4.0.0)
Requires-Dist: iso8601 (~=0.1.14)
Requires-Dist: jinja2 (~=2.11.3)
Requires-Dist: beautifulsoup4 (~=4.9.3)
Requires-Dist: mzml2isa (==1.0.3)
Requires-Dist: biopython (~=1.78)
Requires-Dist: progressbar2 (~=3.53.1)
Requires-Dist: deepdiff (~=5.2.3)
Requires-Dist: PyYAML (~=5.4.1)


<div style="width:100%;">
<img src="https://raw.githubusercontent.com/ISA-tools/ISA-tools.github.io/master/wp-content/uploads/2016/03/isa-api-logo.png" alt="ISA-API Logo" title="ISA-API Logo" width="350" align="left" display: block; />
</div>

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The open source ISA metadata tracking tools help to manage an increasingly diverse set of life science, environmental and biomedical experiments that employing one or a combination of technologies.

Built around the ‘Investigation’ (the project context), Study’ (a unit of research) and ‘Assay’ (analytical measurement) general-purpose Tabular format, the ISA tools helps you to provide rich description of the experimental metadata (i.e. sample characteristics, technology and measurement types, sample-to-data relationships) so that the resulting data and discoveries are reproducible and reusable.

To find out more about ISA, see [https://isa-tools.org/](https://isa-tools.org/)

To find out who's using ISA and about the ISA development and user community, see [www.isacommons.org](http://www.isacommons.org)

The *ISA API*  aims to provide you, the developer, with a set of tools to help you easily and quickly build your own ISA objects, validate, and convert between serializations of ISA-formatted datasets and other formats/schemas (e.g. SRA schemas). The ISA API is published on PyPI as the `isatools` package.

`isatools` currently supports Python 3.6+.

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*Authors*: [The ISA team](http://www.isa-tools.org/team/).

*License*:      This code is licensed under the [CPAL License](https://raw.githubusercontent.com/ISA-tools/isa-api/master/LICENSE.txt).

*Repository*:   [https://github.com/ISA-tools/isa-api](https://github.com/ISA-tools/isa-api)

*ISA team email*: [isatools@googlegroups.com](mailto:isatools@googlegroups.com)

*ISA discussion group*: [https://groups.google.com/forum/#!forum/isaforum](https://groups.google.com/forum/#!forum/isaforum)

*Github issue tracker*: [https://github.com/ISA-tools/isa-api/issues](https://github.com/ISA-tools/isa-api/issues)

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Using the ISA-API
-----------------

The documentation to install and use the ISA-API (v0.12) can be found [here](https://isa-tools.org/isa-api/content/index.html).

For the previous versions (up to v0.11) check the documentation [here](https://isatools.readthedocs.io/en/latest/).

Contributing
------------
The ISA-API is still in development. We would be very happy to receive any help and contributions (testing, feature requests, pull requests). Please feel free to contact our development team at [isatools@googlegroups.com](mailto:isatools@googlegroups.com), or ask a question, report a bug or file a feature request in the Github issue tracker at [https://github.com/ISA-tools/isa-api/issues](https://github.com/ISA-tools/isa-api/issues).


