LICENCE
README.md
pyproject.toml
setup.cfg
scanpy_workflow_support_functions/Analytical_pearson_residual_normalisation.py
scanpy_workflow_support_functions/Chu_et_al_2023_signatures.py
scanpy_workflow_support_functions/Teff_c_signature_enrichment_in_whole_scRNAseq_dataset.py
scanpy_workflow_support_functions/UMAP_in_Khav_Lyko_Zou_plotting_function.py
scanpy_workflow_support_functions/__init__.py
scanpy_workflow_support_functions/pd_df_To_csv_To_gmt_conversion.py
scanpy_workflow_support_functions/ridge_plot.py
scanpy_workflow_support_functions/scanpy_workflow.py
scanpy_workflow_support_functions/volcano_plots.py
scanpy_workflow_support_functions.egg-info/PKG-INFO
scanpy_workflow_support_functions.egg-info/SOURCES.txt
scanpy_workflow_support_functions.egg-info/dependency_links.txt
scanpy_workflow_support_functions.egg-info/requires.txt
scanpy_workflow_support_functions.egg-info/top_level.txt
scanpy_workflow_support_functions/DEG_analysis/DEG_analysis_.py
scanpy_workflow_support_functions/DEG_analysis/__init__.py
scanpy_workflow_support_functions/DEG_analysis/deg_analysis_to_get_csv_file.py
scanpy_workflow_support_functions/Spatial_analysis/Read_Khavari_10x_visium_data.py
scanpy_workflow_support_functions/Spatial_analysis/Read_Khavari_10x_visium_data_17Jul24.py
scanpy_workflow_support_functions/Spatial_analysis/SCT_LOG_normalisation_Spatial_scanpy_pipeline.py
scanpy_workflow_support_functions/Spatial_analysis/SCT_LOG_normalisation_Spatial_scanpy_pipeline_2.py
scanpy_workflow_support_functions/Spatial_analysis/To_check_geneExp_in_Visium_HR_LR_samples_24Mar25.py
scanpy_workflow_support_functions/Spatial_analysis/__init__.py
scanpy_workflow_support_functions/Spatial_analysis/cell2loc_adata_REF_to_spatial_adata_predict_cell_types.py
scanpy_workflow_support_functions/Spatial_analysis/read_and_qc_visium_data.py
scanpy_workflow_support_functions/cell_type_abundance_analysis/__init__.py
scanpy_workflow_support_functions/cell_type_abundance_analysis/cell_type_abundance_Zurr.py
scanpy_workflow_support_functions/cell_type_abundance_analysis/cell_type_abundance_combined_bar_plot.py
scanpy_workflow_support_functions/cell_type_abundance_analysis/celltype_abundance_functions_2025.py
scanpy_workflow_support_functions/cell_type_abundance_analysis/celltype_abundance_plots_for_all_TME_subcompartments.py