Metadata-Version: 2.0
Name: pycostanza
Version: 0.3.1
Summary: Python version of Costanza
Home-page: https://gitlab.com/slcu/teamHJ/henrik_aahl/pycostanza
Author: Henrik Ahl
Author-email: hpa22@cam.ac.uk
License: GNU General Public License v3
Keywords: pycostanza
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Requires-Dist: numpy (>=1.15.0)
Requires-Dist: scipy (>=1.0.0)
Requires-Dist: scikit-image (>=0.15)
Requires-Dist: mahotas (>=1.4.5)
Requires-Dist: networkx (>=2.0)
Requires-Dist: tifffile (>=2019.7.26)

==========
pyCostanza
==========


.. image:: https://img.shields.io/pypi/v/pycostanza.svg
        :target: https://pypi.python.org/pypi/pycostanza

.. image:: https://img.shields.io/travis/supersubscript/pycostanza.svg
        :target: https://travis-ci.org/supersubscript/pycostanza

.. image:: https://readthedocs.org/projects/pycostanza/badge/?version=latest
        :target: https://pycostanza.readthedocs.io/en/latest/?badge=latest
        :alt: Documentation Status




PyCostanza is a Python re-write of the ImageJ tool Costanza. It includes
features for segmenting objects in images (e.g. cell nuclei or whole cells)
based on an intensity gradient. 


* Free software: GNU General Public License v3
* Documentation: https://pycostanza.readthedocs.io.


Features
--------

* TODO 

Credits
-------

This package was created with Cookiecutter_ and the `audreyr/cookiecutter-pypackage`_ project template.

.. _Cookiecutter: https://github.com/audreyr/cookiecutter
.. _`audreyr/cookiecutter-pypackage`: https://github.com/audreyr/cookiecutter-pypackage


=======
History
=======

0.1.2 (2018-09-18)
------------------

* Implemented new merging method `merge_labels_small2closest`.

0.1.1 (2018-09-18)
------------------

* Minor performance improvements in segmentation function.
* Resolved bugfix due to not importing functions through relative paths.
* Corrected erronous repository link on pypi.

0.1.0 (2018-09-07)
------------------

* First release on PyPI.


