Metadata-Version: 2.1
Name: motifdata
Version: 0.1.2
Summary: Motif representation and analysis toolkit
Author: adamklie
Author-email: aklie@ucsd.edu
Requires-Python: >=3.9,<3.11
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Provides-Extra: torch
Requires-Dist: biopython (==1.77)
Requires-Dist: h5py (>=3.7.0,<4.0.0)
Requires-Dist: numpy (>=1.23.2,<2.0.0)
Requires-Dist: pandas (>=1.5.2,<2.0.0)
Requires-Dist: pyjaspar (==2.1.1)
Requires-Dist: pymemesuite (==0.1.0a1)
Requires-Dist: pyranges (==0.0.120)
Requires-Dist: torch[torch] (>=1.12.0) ; extra == "torch"
Description-Content-Type: text/markdown

[![PyPI version](https://badge.fury.io/py/seqexplainer.svg)](https://badge.fury.io/py/motifdata)

<img src="docs/_static/MotifData_logo.png" alt="MotifData Logo" width=350>

# MotifData - Motif analysis toolkit in Python

```python
import motifdata as motif
```

### Motif analysis with [MotifData](https://github.com/ML4GLand/MotifData)

  - Perform HOMER motif analysis
  - Perform MEME motif analysis
  - Perform DEM (Cluster-buster based) motif analysis
  - Perform cisTarget
