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CITATION.cff
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README.md
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docs/valuable-prs/2023-02-27.110.pr.open.md
examples/README.md
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examples/documentation/PTI_experiment/PTI_full_FOV_cardiac_muscle.ipynb
examples/documentation/PTI_experiment/PTI_full_FOV_cardiomyocyte_infected_1.ipynb
examples/documentation/PTI_experiment/PTI_full_FOV_cardiomyocyte_infected_2.ipynb
examples/documentation/PTI_experiment/PTI_full_FOV_cardiomyocyte_mock.ipynb
examples/documentation/PTI_experiment/PTI_full_FOV_human_uterus.ipynb
examples/documentation/PTI_experiment/PTI_full_FOV_mouse_brain_aco.ipynb
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examples/documentation/fluorescence_deconvolution/fluorescence_deconv.ipynb
examples/maintenance/README.md
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examples/maintenance/PTI_simulation/README.md
examples/maintenance/QLIPP_simulation/2D_QLIPP_forward.py
examples/maintenance/QLIPP_simulation/2D_QLIPP_recon.py
examples/models/README.md
examples/models/inplane_oriented_thick_pol3d.py
examples/models/inplane_oriented_thick_pol3d_vector.py
examples/models/isotropic_fluorescent_thick_3d.py
examples/models/isotropic_thin_3d.py
examples/models/phase_thick_3d.py
examples/visuals/plot_greens_tensor.py
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tests/__init__.py
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waveorder/__init__.py
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waveorder/models/inplane_oriented_thick_pol3d.py
waveorder/models/inplane_oriented_thick_pol3d_vector.py
waveorder/models/isotropic_fluorescent_thick_3d.py
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waveorder/visuals/jupyter_visuals.py
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waveorder/visuals/napari_visuals.py
waveorder/visuals/utils.py