Metadata-Version: 2.1
Name: singlem
Version: 0.15.0
Summary: Novelty-inclusive microbial community profiling of shotgun metagenomes
Home-page: https://github.com/wwood/SingleM
Author: Ben Woodcroft
License: GPL3+
Keywords: metagenomics bioinformatics
Classifier: Development Status :: 4 - Beta
Classifier: Topic :: Scientific/Engineering
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)
Classifier: Programming Language :: Python :: 3
Description-Content-Type: text/markdown
License-File: LICENCE.txt
Requires-Dist: graftm >=0.14.0
Requires-Dist: extern >=0.0.4
Requires-Dist: biopython >=1.64
Requires-Dist: pandas >=0.19.2
Requires-Dist: squarify >=0.3.0
Requires-Dist: matplotlib >=2.0.2
Requires-Dist: sqlalchemy
Requires-Dist: bird-tool-utils >=0.4.1
Requires-Dist: zenodo-backpack
Requires-Dist: pyranges
Requires-Dist: polars >=0.19.3
Requires-Dist: tqdm
Requires-Dist: pyarrow


Welcome.

SingleM is a tool for profiling shotgun metagenomes. It has a particular strength in detecting microbial lineages which are not in reference databases. The method it uses also makes it suitable for some related tasks, such as assessing eukaryotic contamination, finding bias in genome recovery, computing ecological diversity metrics, and lineage-targeted MAG recovery.

Documentation can be found at https://wwood.github.io/singlem/
