README.md
setup.cfg
setup.py
methylprep/__init__.py
methylprep/__main__.py
methylprep/cli.py
methylprep/version.py
methylprep.egg-info/PKG-INFO
methylprep.egg-info/SOURCES.txt
methylprep.egg-info/dependency_links.txt
methylprep.egg-info/entry_points.txt
methylprep.egg-info/requires.txt
methylprep.egg-info/top_level.txt
methylprep/download/__init__.py
methylprep/download/array_express.py
methylprep/download/geo.py
methylprep/download/geo_alert.py
methylprep/download/miniml.py
methylprep/download/process_data.py
methylprep/download/samplesheet_sync_idat.py
methylprep/files/__init__.py
methylprep/files/idat.py
methylprep/files/manifests.py
methylprep/files/sample_sheets.py
methylprep/models/__init__.py
methylprep/models/arrays.py
methylprep/models/controls.py
methylprep/models/meth_dataset.py
methylprep/models/probes.py
methylprep/models/samples.py
methylprep/processing/__init__.py
methylprep/processing/p_value_probe_detection.py
methylprep/processing/pipeline.py
methylprep/processing/postprocess.py
methylprep/processing/preprocess.py
methylprep/processing/raw_dataset.py
methylprep/processing/read_geo_processed.py
methylprep/utils/__init__.py
methylprep/utils/data_frames.py
methylprep/utils/files.py
methylprep/utils/parsing.py
methylprep/utils/progress_bar.py