torch>=2.2
lightning
pytorch-lightning<3.0,>=2.0
gReLU==1.0.5
wandb
bpnet-lite==0.8.1
numpy<2.0.0,>=1.16
scipy
pandas
h5py
pyarrow
fastparquet
google-cloud-storage
gcsfs
pyBigWig==0.3.25
xxhash
ml-collections

[dev]
pytest
pytest-xdist
pytest-repeat
pytest-cov
coverage
pyclean
