Metadata-Version: 1.1
Name: bioconvert
Version: 0.4.1
Summary: convert between bioinformatics formats
Home-page: ['http://pypi.python.org/pypi/bioconvert']
Author: Thomas Cokelaer
Author-email: thomas.cokelaer@pasteur.fr
License: BSD
Download-URL: ['http://pypi.python.org/pypi/bioconvert']
Description-Content-Type: UNKNOWN
Description: Bioconvert
        ==========
        
        **Bioconvert** is a collaborative project to facilitate the interconversion of life science data from one format to another.
        
        .. image:: https://badge.fury.io/py/bioconvert.svg
            :target: https://pypi.python.org/pypi/bioconvert
        
        .. image:: https://secure.travis-ci.org/bioconvert/bioconvert.png
            :target: http://travis-ci.org/bioconvert/bioconvert
        
        .. image:: https://coveralls.io/repos/github/bioconvert/bioconvert/badge.svg?branch=master
           :target: https://coveralls.io/github/bioconvert/bioconvert?branch=master
        
        .. image:: http://readthedocs.org/projects/bioconvert/badge/?version=master
            :target: http://bioconvert.readthedocs.org/en/master/?badge=master
            :alt: Documentation Status
        
        .. .. image:: https://badges.gitter.im/bioconvert/bioconvert.svg
            :target: https://gitter.im/bioconvert/Lobby?source=orgpage
        
        .. image::  https://img.shields.io/github/issues/bioconvert/bioconvert.svg
            :target:  https://github.com/bioconvert/bioconvert/issues
        
        .. image:: https://www.singularity-hub.org/static/img/hosted-singularity--hub-%23e32929.svg
           :target: https://singularity-hub.org/collections/135
        
        .. image:: https://anaconda.org/bioconda/bioconvert/badges/platforms.svg
           :target: https://anaconda.org/bioconda/bioconvert
        
        .. image::  https://anaconda.org/bioconda/bioconvert/badges/installer/conda.svg
            :target: https://conda.anaconda.org/bioconda
        
        
        
        :contributions: Want to add a convertor ? Please join https://github.com/bioconvert/bioconvert/issues/1
        :issues: Please use https://github.com/bioconvert/bioconvert/issues
        
        
        Installation
        ###############
        
        In order to install bioconvert, you can use **pip**::
        
            pip install bioconvert
        
        We also provide releases on bioconda (http://bioconda.github.io/)::
        
            conda install bioconvert
        
        and Singularity container are available. See
        http://bioconvert.readthedocs.io/en/master/user_guide.html#installation for
        details.
        
        Usage
        ##########
        
        ::
        
            bioconvert fastq2fasta input.fastq output.fasta
            bioconvert gz2dsrc input.fq.gz output.dsrc2
            bioconvert bam2bed input.bam output.bed
            bioconvert --help
        
        Available Converters
        #######################
        
        .. image:: https://raw.githubusercontent.com/bioconvert/bioconvert/master/doc/conversion.png
            :width: 80%
        
        
        
Keywords: NGS,bam2bed,fastq2fasta,bam2sam
Platform: Linux
Platform: Unix
Platform: MacOsX
Platform: Windows
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: BSD License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Topic :: Software Development :: Libraries :: Python Modules
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Information Analysis
