Metadata-Version: 1.0
Name: shogen
Version: 1.4.2
Summary: Finding shortest genome segments that regulate metabolic pathways.
Home-page: http://pypi.python.org/pypi/shogen/
Author: Sven Thiele
Author-email: sthiele78@gmail.com
License: GPLv3+
Description: Installation
        ============
        
        You can install shogen by running::
        
        	$ pip install shogen
        
        
        Usage
        =====
        
        Typical usage is::
        
        	$ shogen.py [options] genomefile metabolismfile catalysationfile queries
        
        	Options:
        	  -h, --help   show this help message and exit
        	  -k K, --k=K  Number of ranked  shortest genome segments (Default to 5)
        	  -l L, --l=L  maximum length of a genome segment (Default to 200)
        
         
        Samples
        =======
        
        Sample files for finding functional gene units in e. coli are available here::
              genome.txt_ metabolism.sbml_ catalyze.txt_ queries.txt_
        
        .. _genome.txt: http://bioasp.github.io/downloads/samples/ecoli_K12data/genome.txt
        .. _metabolism.txt: http://bioasp.github.io/downloads/samples/ecoli_K12data/metabolism.txt
        .. _catalyze.txt: http://bioasp.github.io/downloads/samples/ecoli_K12data/catalyze.txt
        .. _queries.txt: http://bioasp.github.io/downloads/samples/ecoli_K12data/queries.txt
        
Platform: UNKNOWN
