@prefix : <https://w3id.org/linkml/> .
@prefix UNKNOWN_PREFIX: <http://example.org/UNKNOWN/UNKNOWN_PREFIX/> .
@prefix biolink: <https://w3id.org/biolink/vocab/> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix gff3: <https://github.com/The-Sequence-Ontology/Specifications/blob/master/gff3.md#> .
@prefix linkml: <https://w3id.org/linkml/> .
@prefix ns1: <http://www.w3.org/2004/02/skos/core#> .
@prefix owl: <http://example.org/UNKNOWN/owl/> .
@prefix pav: <http://purl.org/pav/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix rdf1: <http://example.org/UNKNOWN/rdf/> .
@prefix rdfs1: <http://example.org/UNKNOWN/rdfs/> .
@prefix shex: <http://www.w3.org/ns/shex#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

biolink:Biolink-Model a linkml:SchemaDefinition ;
    dct:license "https://creativecommons.org/publicdomain/zero/1.0/" ;
    pav:version "2.2.3" ;
    ns1:definition "Entity and association taxonomy and datamodel for life-sciences data" ;
    linkml:classes biolink:Snv,
        biolink:Thing ;
    linkml:default_curi_maps "obo_context" ;
    linkml:default_prefix "biolink" ;
    linkml:default_range biolink:string ;
    linkml:emit_prefixes "BIOGRID",
        "OIO",
        "SO",
        "rdf",
        "rdfs",
        "skos",
        "xsd" ;
    linkml:generation_date "2021-08-25 09:41"^^xsd:dateTime ;
    linkml:id <https://w3id.org/biolink/biolink-model> ;
    linkml:imports linkml:types ;
    linkml:metamodel_version "1.7.0" ;
    linkml:prefixes [ linkml:prefix_prefix "gff3" ;
            linkml:prefix_reference gff3: ],
        [ linkml:prefix_prefix "prov" ;
            linkml:prefix_reference prov: ],
        [ linkml:prefix_prefix "linkml" ;
            linkml:prefix_reference linkml: ],
        [ linkml:prefix_prefix "dct" ;
            linkml:prefix_reference dct: ],
        [ linkml:prefix_prefix "SIO" ;
            linkml:prefix_reference <http://semanticscience.org/resource/SIO_> ],
        [ linkml:prefix_prefix "biolink" ;
            linkml:prefix_reference biolink: ],
        [ linkml:prefix_prefix "RO" ;
            linkml:prefix_reference <http://purl.obolibrary.org/obo/RO_> ] ;
    linkml:slots biolink:has_evidence,
        biolink:name,
        biolink:type ;
    linkml:source_file "linkml_issue_163.yaml" ;
    linkml:source_file_date "Wed Aug 25 09:38:06 2021"^^xsd:dateTime ;
    linkml:source_file_size 1601 ;
    linkml:types biolink:boolean,
        biolink:date,
        biolink:datetime,
        biolink:decimal,
        biolink:double,
        biolink:float,
        biolink:integer,
        biolink:ncname,
        biolink:nodeidentifier,
        biolink:objectidentifier,
        biolink:string,
        biolink:time,
        biolink:uri,
        biolink:uriorcurie .

biolink:boolean a linkml:TypeDefinition ;
    ns1:definition "A binary (true or false) value" ;
    ns1:inScheme linkml:types ;
    linkml:base "Bool" ;
    linkml:definition_uri linkml:Boolean ;
    linkml:imported_from "linkml:types" ;
    linkml:repr "bool" ;
    linkml:uri xsd:boolean .

biolink:date a linkml:TypeDefinition ;
    ns1:definition "a date (year, month and day) in an idealized calendar" ;
    ns1:editorialNote "URI is dateTime because OWL reasoners don't work with straight date or time" ;
    ns1:inScheme linkml:types ;
    linkml:base "XSDDate" ;
    linkml:definition_uri linkml:Date ;
    linkml:imported_from "linkml:types" ;
    linkml:repr "str" ;
    linkml:uri xsd:date .

biolink:datetime a linkml:TypeDefinition ;
    ns1:definition "The combination of a date and time" ;
    ns1:inScheme linkml:types ;
    linkml:base "XSDDateTime" ;
    linkml:definition_uri linkml:Datetime ;
    linkml:imported_from "linkml:types" ;
    linkml:repr "str" ;
    linkml:uri xsd:dateTime .

biolink:decimal a linkml:TypeDefinition ;
    ns1:definition "A real number with arbitrary precision that conforms to the xsd:decimal specification" ;
    ns1:inScheme linkml:types ;
    linkml:base "Decimal" ;
    linkml:definition_uri linkml:Decimal ;
    linkml:imported_from "linkml:types" ;
    linkml:uri xsd:decimal .

biolink:double a linkml:TypeDefinition ;
    ns1:definition "A real number that conforms to the xsd:double specification" ;
    ns1:inScheme linkml:types ;
    linkml:base "float" ;
    linkml:definition_uri linkml:Double ;
    linkml:imported_from "linkml:types" ;
    linkml:uri xsd:double .

biolink:float a linkml:TypeDefinition ;
    ns1:definition "A real number that conforms to the xsd:float specification" ;
    ns1:inScheme linkml:types ;
    linkml:base "float" ;
    linkml:definition_uri linkml:Float ;
    linkml:imported_from "linkml:types" ;
    linkml:uri xsd:float .

biolink:integer a linkml:TypeDefinition ;
    ns1:definition "An integer" ;
    ns1:inScheme linkml:types ;
    linkml:base "int" ;
    linkml:definition_uri linkml:Integer ;
    linkml:imported_from "linkml:types" ;
    linkml:uri xsd:integer .

biolink:ncname a linkml:TypeDefinition ;
    ns1:definition "Prefix part of CURIE" ;
    ns1:inScheme linkml:types ;
    linkml:base "NCName" ;
    linkml:definition_uri linkml:Ncname ;
    linkml:imported_from "linkml:types" ;
    linkml:repr "str" ;
    linkml:uri xsd:string .

biolink:nodeidentifier a linkml:TypeDefinition ;
    ns1:definition "A URI, CURIE or BNODE that represents a node in a model." ;
    ns1:inScheme linkml:types ;
    linkml:base "NodeIdentifier" ;
    linkml:definition_uri linkml:Nodeidentifier ;
    linkml:imported_from "linkml:types" ;
    linkml:repr "str" ;
    linkml:uri shex:nonLiteral .

biolink:objectidentifier a linkml:TypeDefinition ;
    ns1:definition "A URI or CURIE that represents an object in the model." ;
    ns1:inScheme linkml:types ;
    ns1:note "Used for inheritence and type checking" ;
    linkml:base "ElementIdentifier" ;
    linkml:definition_uri linkml:Objectidentifier ;
    linkml:imported_from "linkml:types" ;
    linkml:repr "str" ;
    linkml:uri shex:iri .

biolink:time a linkml:TypeDefinition ;
    ns1:definition "A time object represents a (local) time of day, independent of any particular day" ;
    ns1:editorialNote "URI is dateTime because OWL reasoners don't work with straight date or time" ;
    ns1:inScheme linkml:types ;
    linkml:base "XSDTime" ;
    linkml:definition_uri linkml:Time ;
    linkml:imported_from "linkml:types" ;
    linkml:repr "str" ;
    linkml:uri xsd:dateTime .

biolink:uri a linkml:TypeDefinition ;
    ns1:definition "a complete URI" ;
    ns1:inScheme linkml:types ;
    linkml:base "URI" ;
    linkml:definition_uri linkml:Uri ;
    linkml:imported_from "linkml:types" ;
    linkml:repr "str" ;
    linkml:uri xsd:anyURI .

biolink:uriorcurie a linkml:TypeDefinition ;
    ns1:definition "a URI or a CURIE" ;
    ns1:inScheme linkml:types ;
    linkml:base "URIorCURIE" ;
    linkml:definition_uri linkml:Uriorcurie ;
    linkml:imported_from "linkml:types" ;
    linkml:repr "str" ;
    linkml:uri xsd:anyURI .

biolink:Thing a linkml:ClassDefinition ;
    ns1:inScheme <https://w3id.org/biolink/biolink-model> ;
    ns1:mappingRelation owl:Thing ;
    linkml:class_uri owl:Thing ;
    linkml:definition_uri biolink:Thing ;
    linkml:slot_usage [ ] .

biolink:name a linkml:SlotDefinition ;
    ns1:altLabel "display name",
        "label",
        "title" ;
    ns1:exactMatch gff3:Name ;
    ns1:inScheme <https://w3id.org/biolink/biolink-model> ;
    ns1:mappingRelation rdfs1:label ;
    ns1:narrowMatch dct:title ;
    linkml:definition_uri biolink:name ;
    linkml:range biolink:string ;
    linkml:slot_uri rdfs1:label .

biolink:type a linkml:SlotDefinition ;
    ns1:inScheme <https://w3id.org/biolink/biolink-model> ;
    ns1:mappingRelation rdf1:type ;
    linkml:definition_uri biolink:type ;
    linkml:range biolink:string ;
    linkml:slot_uri rdf1:type .

biolink:Snv a linkml:ClassDefinition ;
    ns1:altLabel "single nucleotide polymorphism",
        "single nucleotide variant",
        "snp" ;
    ns1:definition "SNVs are single nucleotide positions in genomic DNA at which different sequence alternatives exist" ;
    ns1:exactMatch UNKNOWN_PREFIX:1234567,
        <http://purl.obolibrary.org/obo/SO_0001483> ;
    ns1:inScheme <https://w3id.org/biolink/biolink-model> ;
    linkml:class_uri biolink:Snv ;
    linkml:definition_uri biolink:Snv ;
    linkml:slot_usage [ ] .

biolink:has_evidence a linkml:SlotDefinition ;
    ns1:definition "connects an association to an instance of supporting evidence" ;
    ns1:exactMatch <http://purl.obolibrary.org/obo/RO_0002558> ;
    ns1:inScheme <https://w3id.org/biolink/biolink-model> ;
    linkml:definition_uri biolink:has_evidence ;
    linkml:range biolink:string ;
    linkml:slot_uri biolink:has_evidence .

biolink:string a linkml:TypeDefinition ;
    ns1:definition "A character string" ;
    ns1:inScheme linkml:types ;
    linkml:base "str" ;
    linkml:definition_uri linkml:String ;
    linkml:imported_from "linkml:types" ;
    linkml:uri xsd:string .


