id: http://clinicalprofiles.org/biolink/extension
name: ClinicalProfile_Biolink_Model_extensions
description: Biolink model extensions for the ClinicalProfile knowledge graphs
license: https://creativecommons.org/publicdomain/zero/1.0/

prefixes:
  model: https://w3id.org/biolink/
  biolink: https://w3id.org/biolink/vocab/
  linkml: https://w3id.org/linkml/

default_prefix: biolink
default_range: string

imports:
  - model:biolink-model

emit_prefixes:
  - OIO

slots:
  has active ingredient:
    domain: medicine
    range: drug
    multivalued: true

classes:
  laboratory result:
    description:  The result of a clinical laboratory test performed on a patient
    is_a: phenomenon

  laboratory test:
    description: The definition and description of a clinical laboratory test
    is_a: procedure

  medication:
    description: Medication that has been prescribed and (ostensibly) taken
    is_a: clinical intervention

  medicine:
    description: Description of the contents of a medication
    is_a: chemical substance
    slots:
      - has active ingredient

# procedure is already defined, although one might context its definition

  diagnosis:
    description: An assertion of a disease or disorder
    is_a:

