Metadata-Version: 2.0
Name: genometools
Version: 0.3.3
Summary: GenomeTools: A Python Framework for Analyzing Genomic Data.
Home-page: https://github.com/flo-compbio/genometools
Author: Florian Wagner
Author-email: florian.wagner@duke.edu
License: GPLv3
Keywords: genome genes tools analysis expression sequencing
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Programming Language :: Python :: 2.7
Classifier: Programming Language :: Python :: 3.5
Requires-Dist: biopython (>=1.69)
Requires-Dist: ftputil (<4,>=3.3.1)
Requires-Dist: future (>=0.15.2,<1)
Requires-Dist: google-cloud-storage (>=0.23.1)
Requires-Dist: jinja2 (>=2.9.5,<3)
Requires-Dist: numpy (>=1.8,<2)
Requires-Dist: oauth2client (<5,>=4)
Requires-Dist: pandas (>=0.18,<1)
Requires-Dist: plotly (>=1.9.6,<3)
Requires-Dist: requests (<3,>=2.9.1)
Requires-Dist: scipy (>=0.14,<1)
Requires-Dist: six (>=1.5.2,<2)
Requires-Dist: sortedcontainers (>=1.5.7,<2)
Requires-Dist: unicodecsv (>=0.14.1,<1)
Requires-Dist: xlmhg (>=2.4.9,<3)
Requires-Dist: xmltodict (>=0.10.1,<1)
Provides-Extra: docs
Requires-Dist: mock; extra == 'docs'
Requires-Dist: sphinx; extra == 'docs'
Requires-Dist: sphinx-argparse; extra == 'docs'
Requires-Dist: sphinx-rtd-theme; extra == 'docs'
Provides-Extra: tests
Requires-Dist: pytest (>=2.8.5,<4); extra == 'tests'
Requires-Dist: pytest-cov (>=2.2.1,<3); extra == 'tests'

..
    Copyright (c) 2015, 2016 Florian Wagner

    This file is part of GenomeTools.

    GenomeTools is free software: you can redistribute it and/or modify
    it under the terms of the GNU General Public License, Version 3,
    as published by the Free Software Foundation.

    This program is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    GNU General Public License for more details.

    You should have received a copy of the GNU General Public License
    along with this program. If not, see <http://www.gnu.org/licenses/>.

GenomeTools
===========

| |pypi| |versions| |license|

===========  =================================================
**latest**   |travis-latest| |codecov-latest| |docs-latest|
**develop**  |travis-develop| |codecov-develop| |docs-develop|
===========  =================================================

GenomeTools is a collection of Python classes, functions, and scripts for
analyzing genomic data. The library is compatible with Python 2.7 and 3.5.

Installation
------------

.. code-block:: bash

	$ pip install genometools

Demo Notebooks
--------------

- `Scripts.ipynb <docs/source/notebooks/Scripts.ipynb>`_: GenomeTools
  command-line scripts

Documentation
-------------

The `GenomeTools Documentation`__ is available on ReadTheDocs.

__ gtdocs_

Copyright and License
---------------------

Copyright (c) 2015, 2016 Florian Wagner

::

  GenomeTools is free software: you can redistribute it and/or modify
  it under the terms of the GNU General Public License, Version 3,
  as published by the Free Software Foundation.

  This program is distributed in the hope that it will be useful,
  but WITHOUT ANY WARRANTY; without even the implied warranty of
  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  GNU General Public License for more details.

  You should have received a copy of the GNU General Public License
  along with this program. If not, see <http://www.gnu.org/licenses/>.

.. |pypi| image:: https://img.shields.io/pypi/v/genometools.svg
    :target: https://pypi.python.org/pypi/genometools
    :alt: PyPI version

.. |versions| image:: https://img.shields.io/pypi/pyversions/genometools.svg
    :target: https://pypi.python.org/pypi/genometools
    :alt: Python versions supported

.. |license| image:: https://img.shields.io/pypi/l/genometools.svg
    :target: https://pypi.python.org/pypi/genometools
    :alt: License

.. |travis-latest| image:: https://travis-ci.org/flo-compbio/genometools.svg?branch=master
    :alt: Build Status (master branch)
    :target: https://travis-ci.org/flo-compbio/genometools

.. |travis-develop| image:: https://travis-ci.org/flo-compbio/genometools.svg?branch=develop
    :alt: Build Status (develop branch)
    :target: https://travis-ci.org/flo-compbio/genometools

.. |codecov-latest| image:: https://codecov.io/github/flo-compbio/genometools/coverage.svg?branch=master
    :alt: Coverage (master branch)
    :target: https://codecov.io/github/flo-compbio/genometools?branch=master

.. |codecov-develop| image:: https://codecov.io/github/flo-compbio/genometools/coverage.svg?branch=develop
    :alt: Coverage (develop branch)
    :target: https://codecov.io/github/flo-compbio/genometools?branch=develop

.. |docs-latest| image:: https://readthedocs.org/projects/genometools/badge/?version=latest
    :alt: Documentation Status (master branch)
    :target: https://genometools.readthedocs.org/en/latest

.. |docs-develop| image:: https://readthedocs.org/projects/genometools/badge/?version=develop
    :alt: Documentation Status (develop branch)
    :target: https://genometools.readthedocs.org/en/develop

.. _gtdocs: https://genometools.readthedocs.org/en/latest/


