Metadata-Version: 2.1
Name: bedparse
Version: 0.2.1
Summary: A simple library and CLI tool to manipulate BED files
Home-page: https://github.com/tleonardi/bedparse
Author: Tommaso Leonardi
Author-email: tom@tleo.io
License: MIT
Description: [![Build Status](https://travis-ci.org/tleonardi/bedparse.svg?branch=master)](https://travis-ci.org/tleonardi/bedparse)
        [![License: MIT](https://img.shields.io/badge/License-MIT-yellow.svg)](https://opensource.org/licenses/MIT)
         
        # Bedparse
        
        ![](docs/bedparse.svg)
        
        Bedparse is a simple python module and CLI tool to perform common operations on BED files.
        
        It offers the following functionality:
        * Filtering of transcripts based on annotations
        * Joining of annotation files based on transcript names
        * Conversion from GTF to BED format
        * Conversion from UCSC to Ensembl chromosome names (and viceversa)
        * Conversion from bed12 to bed6
        * Promoter reporting
        * Intron reporting
        * CDS reporting
        * UTR reporting 
        
        ## Installation
        
        ```
        pip install bedparse
        ```
        
        ## Documentation
        
        Our documentation is hosted on [Read the Docs](https://bedparse.readthedocs.io/en/latest/).
        
        We also have a short [tutorial](https://bedparse.readthedocs.io/en/latest/Tutorial.html) to guide you through the basic functions.
        
        
        
Platform: UNKNOWN
Classifier: Development Status :: 5 - Production/Stable
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3.2
Classifier: Programming Language :: Python :: 3.3
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Requires-Python: >=3
Description-Content-Type: text/markdown
