Metadata-Version: 2.1
Name: fgbio-postprocessing
Version: 0.1.2
Summary: fgbio_postprocessing
Home-page: https://github.com/ionox0/fgbio_postprocessing
Author: ian johnson
Author-email: ionox0@gmail.com
License: MIT license
Keywords: fgbio_postprocessing
Platform: UNKNOWN
Classifier: Development Status :: 2 - Pre-Alpha
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved :: MIT License
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Requires-Python: >=3.5
Requires-Dist: click (==7.1.2)
Requires-Dist: pysam (==0.15.4)

====================
fgbio_postprocessing
====================


.. image:: https://img.shields.io/pypi/v/fgbio_postprocessing.svg
        :target: https://pypi.python.org/pypi/fgbio_postprocessing

.. image:: https://img.shields.io/travis/ionox0/fgbio_postprocessing.svg
        :target: https://travis-ci.com/ionox0/fgbio_postprocessing

.. image:: https://readthedocs.org/projects/fgbio-postprocessing/badge/?version=latest
        :target: https://fgbio-postprocessing.readthedocs.io/en/latest/?badge=latest
        :alt: Documentation Status

Usage: simplex_filter [OPTIONS]

  Filter bam file to only simplex reads with `min_simplex_reads` on one
  strand

Options:
  --input_bam TEXT             Path to bam to be filtered  [required]
  --output_filename TEXT       Name of output bam  [required]
  --min_simplex_reads INTEGER  Minimum number of simplex reads to pass filter
  --help                       Show this message and exit.


Credits
-------

This package was created with Cookiecutter_ and the `audreyr/cookiecutter-pypackage`_ project template.

.. _Cookiecutter: https://github.com/audreyr/cookiecutter
.. _`audreyr/cookiecutter-pypackage`: https://github.com/audreyr/cookiecutter-pypackage


=======
History
=======

0.1.0 (2020-08-25)
------------------

* First release on PyPI.


