AUTHORS.rst
LICENSE.md
MANIFEST.in
README.md
pyproject.toml
setup.cfg
setup.py
versioneer.py
snakemake/__init__.py
snakemake/__main__.py
snakemake/_version.py
snakemake/benchmark.py
snakemake/checkpoints.py
snakemake/cwl.py
snakemake/dag.py
snakemake/decorators.py
snakemake/exceptions.py
snakemake/gui.html
snakemake/gui.py
snakemake/io.py
snakemake/jobs.py
snakemake/logging.py
snakemake/modules.py
snakemake/notebook.py
snakemake/output_index.py
snakemake/parser.py
snakemake/path_modifier.py
snakemake/persistence.py
snakemake/report.css
snakemake/resources.py
snakemake/ruleinfo.py
snakemake/rules.py
snakemake/scheduler.py
snakemake/script.py
snakemake/shell.py
snakemake/sourcecache.py
snakemake/stats.py
snakemake/utils.py
snakemake/workflow.py
snakemake/wrapper.py
snakemake.egg-info/PKG-INFO
snakemake.egg-info/SOURCES.txt
snakemake.egg-info/dependency_links.txt
snakemake.egg-info/entry_points.txt
snakemake.egg-info/not-zip-safe
snakemake.egg-info/requires.txt
snakemake.egg-info/top_level.txt
snakemake/caching/__init__.py
snakemake/caching/hash.py
snakemake/caching/local.py
snakemake/caching/remote.py
snakemake/common/__init__.py
snakemake/common/tbdstring.py
snakemake/deployment/__init__.py
snakemake/deployment/conda.py
snakemake/deployment/containerize.py
snakemake/deployment/env_modules.py
snakemake/deployment/singularity.py
snakemake/executors/__init__.py
snakemake/executors/common.py
snakemake/executors/ga4gh_tes.py
snakemake/executors/google_lifesciences.py
snakemake/executors/google_lifesciences_helper.py
snakemake/executors/jobscript.sh
snakemake/linting/__init__.py
snakemake/linting/links.py
snakemake/linting/rules.py
snakemake/linting/snakefiles.py
snakemake/remote/AzBlob.py
snakemake/remote/EGA.py
snakemake/remote/FTP.py
snakemake/remote/GS.py
snakemake/remote/HTTP.py
snakemake/remote/NCBI.py
snakemake/remote/S3.py
snakemake/remote/S3Mocked.py
snakemake/remote/SFTP.py
snakemake/remote/XRootD.py
snakemake/remote/__init__.py
snakemake/remote/dropbox.py
snakemake/remote/gfal.py
snakemake/remote/gridftp.py
snakemake/remote/iRODS.py
snakemake/remote/webdav.py
snakemake/remote/zenodo.py
snakemake/report/__init__.py
snakemake/report/rulegraph_spec.py
snakemake/report/data/__init__.py
snakemake/report/data/categories.py
snakemake/report/data/common.py
snakemake/report/data/packages.py
snakemake/report/data/results.py
snakemake/report/data/rulegraph.py
snakemake/report/data/rules.py
snakemake/report/data/runtimes.py
snakemake/report/data/timeline.py
snakemake/report/template/__init__.py
snakemake/report/template/index.html.jinja2
snakemake/report/template/logo.svg
snakemake/report/template/style.css
snakemake/report/template/components/__init__.py
snakemake/report/template/components/abstract_menu.js
snakemake/report/template/components/abstract_results.js
snakemake/report/template/components/app.js
snakemake/report/template/components/breadcrumbs.js
snakemake/report/template/components/button.js
snakemake/report/template/components/category.js
snakemake/report/template/components/common.js
snakemake/report/template/components/content.js
snakemake/report/template/components/icon.js
snakemake/report/template/components/list_heading.js
snakemake/report/template/components/list_item.js
snakemake/report/template/components/menu.js
snakemake/report/template/components/navbar.js
snakemake/report/template/components/report_info.js
snakemake/report/template/components/result_info.js
snakemake/report/template/components/result_view_button.js
snakemake/report/template/components/rule_graph.js
snakemake/report/template/components/rule_info.js
snakemake/report/template/components/search_results.js
snakemake/report/template/components/stats.js
snakemake/report/template/components/subcategory.js
snakemake/template_rendering/__init__.py
snakemake/template_rendering/jinja2.py
snakemake/template_rendering/yte.py
snakemake/unit_tests/__init__.py
snakemake/unit_tests/templates/__init__.py
snakemake/unit_tests/templates/common.py.jinja2
snakemake/unit_tests/templates/ruletest.py.jinja2