LICENSE
MANIFEST.in
README.rst
_custom_build.py
pyproject.toml
pywfa/.DS_Store
pywfa/WFA_wrap.c
pywfa/WFA_wrap.pxd
pywfa/__init__.py
pywfa/align.c
pywfa/align.cpython-310-darwin.so
pywfa/align.cpython-39-darwin.so
pywfa/align.pxd
pywfa/align.pyx
pywfa.egg-info/PKG-INFO
pywfa.egg-info/SOURCES.txt
pywfa.egg-info/dependency_links.txt
pywfa.egg-info/top_level.txt
pywfa/WFA2_lib/alignment/Makefile
pywfa/WFA2_lib/alignment/affine2p_penalties.c
pywfa/WFA2_lib/alignment/affine2p_penalties.h
pywfa/WFA2_lib/alignment/affine_penalties.c
pywfa/WFA2_lib/alignment/affine_penalties.h
pywfa/WFA2_lib/alignment/cigar.c
pywfa/WFA2_lib/alignment/cigar.h
pywfa/WFA2_lib/alignment/linear_penalties.h
pywfa/WFA2_lib/alignment/score_matrix.c
pywfa/WFA2_lib/alignment/score_matrix.h
pywfa/WFA2_lib/build/affine2p_penalties.o
pywfa/WFA2_lib/build/affine_penalties.o
pywfa/WFA2_lib/build/bitmap.o
pywfa/WFA2_lib/build/cigar.o
pywfa/WFA2_lib/build/commons.o
pywfa/WFA2_lib/build/dna_text.o
pywfa/WFA2_lib/build/heatmap.o
pywfa/WFA2_lib/build/mm_allocator.o
pywfa/WFA2_lib/build/mm_stack.o
pywfa/WFA2_lib/build/profiler_counter.o
pywfa/WFA2_lib/build/profiler_timer.o
pywfa/WFA2_lib/build/score_matrix.o
pywfa/WFA2_lib/build/sequence_buffer.o
pywfa/WFA2_lib/build/string_padded.o
pywfa/WFA2_lib/build/vector.o
pywfa/WFA2_lib/build/wavefront.o
pywfa/WFA2_lib/build/wavefront_align.o
pywfa/WFA2_lib/build/wavefront_aligner.o
pywfa/WFA2_lib/build/wavefront_attributes.o
pywfa/WFA2_lib/build/wavefront_backtrace.o
pywfa/WFA2_lib/build/wavefront_backtrace_buffer.o
pywfa/WFA2_lib/build/wavefront_backtrace_offload.o
pywfa/WFA2_lib/build/wavefront_bialign.o
pywfa/WFA2_lib/build/wavefront_components.o
pywfa/WFA2_lib/build/wavefront_compute.o
pywfa/WFA2_lib/build/wavefront_compute_affine.o
pywfa/WFA2_lib/build/wavefront_compute_affine2p.o
pywfa/WFA2_lib/build/wavefront_compute_edit.o
pywfa/WFA2_lib/build/wavefront_compute_linear.o
pywfa/WFA2_lib/build/wavefront_debug.o
pywfa/WFA2_lib/build/wavefront_display.o
pywfa/WFA2_lib/build/wavefront_extend.o
pywfa/WFA2_lib/build/wavefront_heuristic.o
pywfa/WFA2_lib/build/wavefront_pcigar.o
pywfa/WFA2_lib/build/wavefront_penalties.o
pywfa/WFA2_lib/build/wavefront_plot.o
pywfa/WFA2_lib/build/wavefront_slab.o
pywfa/WFA2_lib/examples/Makefile
pywfa/WFA2_lib/examples/README.md
pywfa/WFA2_lib/examples/wfa_adapt.c
pywfa/WFA2_lib/examples/wfa_basic.c
pywfa/WFA2_lib/examples/wfa_bindings.cpp
pywfa/WFA2_lib/examples/wfa_lambda.cpp
pywfa/WFA2_lib/examples/wfa_repeated.c
pywfa/WFA2_lib/img/heuristics.aband.10.10.png
pywfa/WFA2_lib/img/heuristics.aband.50.50.png
pywfa/WFA2_lib/img/heuristics.band.10.10.png
pywfa/WFA2_lib/img/heuristics.band.10.150.png
pywfa/WFA2_lib/img/heuristics.none.png
pywfa/WFA2_lib/img/heuristics.wfadap.10.50.1.png
pywfa/WFA2_lib/img/heuristics.wfadap.10.50.10.png
pywfa/WFA2_lib/img/wfa.vs.swg.png
pywfa/WFA2_lib/lib/libwfa.a
pywfa/WFA2_lib/scripts/fasta2seq.sh
pywfa/WFA2_lib/scripts/seq2fasta.sh
pywfa/WFA2_lib/scripts/wfa.alg.cmp.py
pywfa/WFA2_lib/scripts/wfa.alg.cmp.score.sh
pywfa/WFA2_lib/scripts/wfa.alg.rescore.py
pywfa/WFA2_lib/scripts/wfa2png.py
pywfa/WFA2_lib/system/Makefile
pywfa/WFA2_lib/system/mm_allocator.c
pywfa/WFA2_lib/system/mm_allocator.h
pywfa/WFA2_lib/system/mm_stack.c
pywfa/WFA2_lib/system/mm_stack.h
pywfa/WFA2_lib/system/profiler_counter.c
pywfa/WFA2_lib/system/profiler_counter.h
pywfa/WFA2_lib/system/profiler_timer.c
pywfa/WFA2_lib/system/profiler_timer.h
pywfa/WFA2_lib/tools/.DS_Store
pywfa/WFA2_lib/tools/README.md
pywfa/WFA2_lib/utils/Makefile
pywfa/WFA2_lib/utils/bitmap.c
pywfa/WFA2_lib/utils/bitmap.h
pywfa/WFA2_lib/utils/commons.c
pywfa/WFA2_lib/utils/commons.h
pywfa/WFA2_lib/utils/dna_text.c
pywfa/WFA2_lib/utils/dna_text.h
pywfa/WFA2_lib/utils/heatmap.c
pywfa/WFA2_lib/utils/heatmap.h
pywfa/WFA2_lib/utils/sequence_buffer.c
pywfa/WFA2_lib/utils/sequence_buffer.h
pywfa/WFA2_lib/utils/string_padded.c
pywfa/WFA2_lib/utils/string_padded.h
pywfa/WFA2_lib/utils/vector.c
pywfa/WFA2_lib/utils/vector.h
pywfa/WFA2_lib/wavefront/Makefile
pywfa/WFA2_lib/wavefront/wavefront.c
pywfa/WFA2_lib/wavefront/wavefront.h
pywfa/WFA2_lib/wavefront/wavefront_align.c
pywfa/WFA2_lib/wavefront/wavefront_align.h
pywfa/WFA2_lib/wavefront/wavefront_aligner.c
pywfa/WFA2_lib/wavefront/wavefront_aligner.h
pywfa/WFA2_lib/wavefront/wavefront_attributes.c
pywfa/WFA2_lib/wavefront/wavefront_attributes.h
pywfa/WFA2_lib/wavefront/wavefront_backtrace.c
pywfa/WFA2_lib/wavefront/wavefront_backtrace.h
pywfa/WFA2_lib/wavefront/wavefront_backtrace_buffer.c
pywfa/WFA2_lib/wavefront/wavefront_backtrace_buffer.h
pywfa/WFA2_lib/wavefront/wavefront_backtrace_offload.c
pywfa/WFA2_lib/wavefront/wavefront_backtrace_offload.h
pywfa/WFA2_lib/wavefront/wavefront_bialign.c
pywfa/WFA2_lib/wavefront/wavefront_bialign.h
pywfa/WFA2_lib/wavefront/wavefront_components.c
pywfa/WFA2_lib/wavefront/wavefront_components.h
pywfa/WFA2_lib/wavefront/wavefront_compute.c
pywfa/WFA2_lib/wavefront/wavefront_compute.h
pywfa/WFA2_lib/wavefront/wavefront_compute_affine.c
pywfa/WFA2_lib/wavefront/wavefront_compute_affine.h
pywfa/WFA2_lib/wavefront/wavefront_compute_affine2p.c
pywfa/WFA2_lib/wavefront/wavefront_compute_affine2p.h
pywfa/WFA2_lib/wavefront/wavefront_compute_edit.c
pywfa/WFA2_lib/wavefront/wavefront_compute_edit.h
pywfa/WFA2_lib/wavefront/wavefront_compute_linear.c
pywfa/WFA2_lib/wavefront/wavefront_compute_linear.h
pywfa/WFA2_lib/wavefront/wavefront_debug.c
pywfa/WFA2_lib/wavefront/wavefront_debug.h
pywfa/WFA2_lib/wavefront/wavefront_display.c
pywfa/WFA2_lib/wavefront/wavefront_display.h
pywfa/WFA2_lib/wavefront/wavefront_extend.c
pywfa/WFA2_lib/wavefront/wavefront_extend.h
pywfa/WFA2_lib/wavefront/wavefront_heuristic.c
pywfa/WFA2_lib/wavefront/wavefront_heuristic.h
pywfa/WFA2_lib/wavefront/wavefront_offset.h
pywfa/WFA2_lib/wavefront/wavefront_pcigar.c
pywfa/WFA2_lib/wavefront/wavefront_pcigar.h
pywfa/WFA2_lib/wavefront/wavefront_penalties.c
pywfa/WFA2_lib/wavefront/wavefront_penalties.h
pywfa/WFA2_lib/wavefront/wavefront_plot.c
pywfa/WFA2_lib/wavefront/wavefront_plot.h
pywfa/WFA2_lib/wavefront/wavefront_slab.c
pywfa/WFA2_lib/wavefront/wavefront_slab.h
pywfa/tests/__init__.py
pywfa/tests/long.fa
pywfa/tests/long.reference.fa
pywfa/tests/short.fa
pywfa/tests/short.reference.fa
pywfa/tests/test.py