Metadata-Version: 1.1
Name: pyega3
Version: 3.0.19
Summary: EGA python client
Home-page: https://github.com/EGA-archive/ega-download-client
Author: EGA team
Author-email: ega-helpdesk@ebi.ac.uk
License: Apache License, Version 2.0
Description: EGA python client - pyEGA3
        pyEGA3 uses the EGA REST API to download authorized datasets and files
        
        Currently works only with Python3
        
        REQUIREMENTS:
        Python "requests" module
        http://docs.python-requests.org/en/master/
        pip3 install requests
        
        Firewall Ports
        This client makes https calls to the EGA AAI (https://ega.ebi.ac.uk:8443/) and to the EGA Data API (https://ega.ebi.ac.uk:8051). Both ports 8443 and 8051 must be reachable from the location where this client script is run. Otherwise you will experience timeouts.
        (e.g. https://ega.ebi.ac.uk:8443/ega-openid-connect-server/, https://ega.ebi.ac.uk:8051/elixir/central/stats/load should not time out).
        -------------------------------------------------------------------------
        INSTALLATION:
        pip3 install pyega3
        -------------------------------------------------------------------------
        USAGE:
        pyega3 [-h] [-d] -cf CREDENTIALS_FILE [-c CONNECTIONS] {datasets,files,fetch} ...
        
        Download from EMBL EBI's EGA (European Genome-phenome Archive)
        
        positional arguments:
          {datasets,files,fetch}
                                subcommands
            datasets            List authorized datasets
            files               List files in a specified dataset
            fetch               Fetch a dataset or file
        
        optional arguments:
          -h, --help            show this help message and exit
          -d, --debug           Extra debugging messages
          -cf CREDENTIALS_FILE, --credentials-file CREDENTIALS_FILE
                                JSON file containing credentials
                                e.g.{'username':'user1','password':'toor'}
          -c CONNECTIONS, --connections CONNECTIONS
                                Download using specified number of connections                      
                                
        -------------------------------------------------------------------------
          
        Credentials file supposed to be in json format e.g:
        {
            "username": "my.email@domain.edu",
            "password": "mypassword",    
            "client_secret":"AMenuDLjVdVo4BSwi0QD54LL6NeVDEZRzEQUJ7hJOM3g4imDZBHHX0hNfKHPeQIGkskhtCmqAJtt_jm7EKq-rWw"
        }
        
        Your username and password are provided to you by EGA.
        
Keywords: EGA,archive
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Programming Language :: Python :: 3.4
