LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
data/cCRE.bed
data/cCRE_document_frequency.npy
data/sample/metadata.csv
data/sample/fragment/HCAHeartST10773171_HCAHeartST10781448.bed
demo/Data Preprocessing.ipynb
demo/Zero-shot Feature Extraction using EpiAgent.ipynb
demo/Zero-shot annotation using EpiAgent-B.ipynb
demo/Zero-shot annotation using EpiAgent-NT.ipynb
demo/.ipynb_checkpoints/Data Preprocessing-checkpoint.ipynb
demo/.ipynb_checkpoints/Zero-shot annotation using EpiAgent-B-checkpoint.ipynb
demo/.ipynb_checkpoints/Zero-shot annotation using EpiAgent-NT-checkpoint.ipynb
epiagent/__init__.py
epiagent/dataset.py
epiagent/inference.py
epiagent/model.py
epiagent/preprocessing.py
epiagent/tokenization.py
epiagent/train.py
epiagent.egg-info/PKG-INFO
epiagent.egg-info/SOURCES.txt
epiagent.egg-info/dependency_links.txt
epiagent.egg-info/requires.txt
epiagent.egg-info/top_level.txt
epiagent/__pycache__/preprocessing.cpython-38.pyc
epiagent/__pycache__/preprocssing.cpython-38.pyc
epiagent/__pycache__/tokenization.cpython-38.pyc
inst/model.png
model/EpiAgent-B/EpiAgent-B_cell_types.json
model/EpiAgent-NT/EpiAgent-NT_cell_types.json