LICENSE.txt
README.rst
setup.cfg
setup.py
rba/__init__.py
rba/_authors.py
rba/_version.py
rba/model.py
rba/cli/__init__.py
rba/cli/generate_rba_model.py
rba/cli/solve_rba_model.py
rba/cli/update_rba_model.py
rba/core/__init__.py
rba/core/compartments.py
rba/core/constraint_blocks.py
rba/core/constraint_matrix.py
rba/core/custom_constraints.py
rba/core/density.py
rba/core/enzymes.py
rba/core/functions.py
rba/core/metabolism.py
rba/core/parameter_vector.py
rba/core/parameters.py
rba/core/processes.py
rba/core/solver.py
rba/core/species.py
rba/core/targets.py
rba/default_data/__init__.py
rba/default_data/EUKARYOTE/Chaperoning_c.fasta
rba/default_data/EUKARYOTE/Chaperoning_m.fasta
rba/default_data/EUKARYOTE/Replication_n.fasta
rba/default_data/EUKARYOTE/TIM_TOM.fasta
rba/default_data/EUKARYOTE/Transcription_n.fasta
rba/default_data/EUKARYOTE/Translation_c.fasta
rba/default_data/EUKARYOTE/Translation_m.fasta
rba/default_data/EUKARYOTE/__init__.py
rba/default_data/EUKARYOTE/default_dna.xml
rba/default_data/EUKARYOTE/default_information.in
rba/default_data/EUKARYOTE/default_metabolites.tsv
rba/default_data/EUKARYOTE/default_mrnas.xml
rba/default_data/EUKARYOTE/default_parameters.xml
rba/default_data/EUKARYOTE/default_process_definition.tsv
rba/default_data/EUKARYOTE/default_sbml_rba_compartment_map.tsv
rba/default_data/EUKARYOTE/default_targets.xml
rba/default_data/EUKARYOTE/trnas.fasta
rba/default_data/PLANT/Chaperoning_1_c.fasta
rba/default_data/PLANT/Chaperoning_2_c.fasta
rba/default_data/PLANT/Chaperoning_h.fasta
rba/default_data/PLANT/Chaperoning_m.fasta
rba/default_data/PLANT/Replication_n.fasta
rba/default_data/PLANT/RubiscoFolding.fasta
rba/default_data/PLANT/TIC_TOC.fasta
rba/default_data/PLANT/TIM_TOM.fasta
rba/default_data/PLANT/Transcription_n.fasta
rba/default_data/PLANT/Translation_c.fasta
rba/default_data/PLANT/Translation_h.fasta
rba/default_data/PLANT/Translation_m.fasta
rba/default_data/PLANT/__init__.py
rba/default_data/PLANT/default_dna.xml
rba/default_data/PLANT/default_information.in
rba/default_data/PLANT/default_metabolites.tsv
rba/default_data/PLANT/default_mrnas.xml
rba/default_data/PLANT/default_parameters.xml
rba/default_data/PLANT/default_process_definition.tsv
rba/default_data/PLANT/default_sbml_rba_compartment_map.tsv
rba/default_data/PLANT/default_targets.xml
rba/default_data/PLANT/trnas.fasta
rba/default_data/PROKARYOTE/Folding.fasta
rba/default_data/PROKARYOTE/Translation.fasta
rba/default_data/PROKARYOTE/__init__.py
rba/default_data/PROKARYOTE/default_dna.xml
rba/default_data/PROKARYOTE/default_information.in
rba/default_data/PROKARYOTE/default_metabolites.tsv
rba/default_data/PROKARYOTE/default_mrnas.xml
rba/default_data/PROKARYOTE/default_parameters.xml
rba/default_data/PROKARYOTE/default_process_definition.tsv
rba/default_data/PROKARYOTE/default_sbml_rba_compartment_map.tsv
rba/default_data/PROKARYOTE/default_targets.xml
rba/default_data/PROKARYOTE/trnas.fasta
rba/default_data/READMES/README.rst
rba/default_data/READMES/README_cellular_components.rst
rba/default_data/READMES/README_data.rst
rba/default_data/READMES/README_helper_files.rst
rba/default_data/READMES/README_machinery_composition.rst
rba/default_data/READMES/README_model.rst
rba/default_data/READMES/README_other.rst
rba/default_data/READMES/README_outputs.rst
rba/default_data/READMES/__init__.py
rba/prerba/__init__.py
rba/prerba/curation_data.py
rba/prerba/default_data.py
rba/prerba/default_targets.py
rba/prerba/enzyme.py
rba/prerba/fasta_parser.py
rba/prerba/macromolecule.py
rba/prerba/manual_annotation.py
rba/prerba/model_builder.py
rba/prerba/pipeline_parameters.py
rba/prerba/process_builder.py
rba/prerba/protein_data.py
rba/prerba/protein_export.py
rba/prerba/sbml_data.py
rba/prerba/uniprot_data.py
rba/prerba/uniprot_importer.py
rba/prerba/user_data.py
rba/prerba/user_machinery.py
rba/utils/__init__.py
rba/utils/efficiencies.py
rba/utils/results.py
rba/xml/__init__.py
rba/xml/_rbaml_version.py
rba/xml/common.py
rba/xml/compartments.py
rba/xml/custom_constraints.py
rba/xml/density.py
rba/xml/enzymes.py
rba/xml/macromolecules.py
rba/xml/metabolism.py
rba/xml/parameters.py
rba/xml/processes.py
rba/xml/targets.py
rbapy.egg-info/PKG-INFO
rbapy.egg-info/SOURCES.txt
rbapy.egg-info/dependency_links.txt
rbapy.egg-info/entry_points.txt
rbapy.egg-info/requires.txt
rbapy.egg-info/top_level.txt
tests/test_cli.py
tests/test_tutorial.py