.gitignore
LICENSE
MANIFEST.in
README.md
mkdocs.yml
pyproject.toml
.github/workflows/cidoc.yml
docs/3d-cell-positions.md
docs/Add-grid.md
docs/Associate.md
docs/Classify-cells.md
docs/Get-RNAs.md
docs/Get-cells.md
docs/Get-nuclei.md
docs/Hierarchical-clustering.md
docs/Image-scalings.md
docs/Installation.md
docs/Known-errors-and-solutions.md
docs/Measure-cytoplasmic-staining.md
docs/Measure-nuclear-staining.md
docs/Separate-junctions-and-nuclei.md
docs/Touching-labels.md
docs/index.md
docs/environnements_list/macbook_pro_M1_fishfeats_1.1_py310.yaml
docs/environnements_list/ubuntu20.04_fishfeats1.1_py3.11.yaml
docs/environnements_list/ubuntu_20.04_fishfeats_1.1_py310.yaml
docs/environnements_list/windows10_fishfeats1.1.11_py39.yaml
docs/environnements_list/windows10_fishfeats_1.1.11_py310.yaml
docs/imgs/Main_snapshot.png
docs/imgs/assigning.png
docs/imgs/assoe.png
docs/imgs/assosync.png
docs/imgs/classProj_edit.png
docs/imgs/class_border.png
docs/imgs/class_mainpara.png
docs/imgs/class_parameters.png
docs/imgs/cytomes.png
docs/imgs/fromnclosest.png
docs/imgs/get_juncs.png
docs/imgs/grid.png
docs/imgs/grid_interface.png
docs/imgs/hier_analysis.png
docs/imgs/main.png
docs/imgs/measureIm.png
docs/imgs/measurecells.png
docs/imgs/nuc_measure.png
docs/imgs/nucleilab.png
docs/imgs/projecting.png
docs/imgs/projection.png
docs/imgs/rna_assigned.png
docs/imgs/rna_counts.png
docs/imgs/rna_display.png
docs/imgs/rna_toseg.png
docs/imgs/separated.png
docs/imgs/snap.png
docs/imgs/start_scale_anoot.png
docs/imgs/touch_griot.png
docs/imgs/touchs.png
docs/imgs/zpos3d.png
src/_tests/test_basics.py
src/fish_feats/Analysis.py
src/fish_feats/Association.py
src/fish_feats/CellObjects.py
src/fish_feats/ClassifyCells.py
src/fish_feats/Configuration.py
src/fish_feats/DaskedEpyseg.py
src/fish_feats/FishGrid.py
src/fish_feats/FishWidgets.py
src/fish_feats/MainImage.py
src/fish_feats/NapaCells.py
src/fish_feats/NapaMix.py
src/fish_feats/NapaNuclei.py
src/fish_feats/NapaRNA.py
src/fish_feats/Naparing.py
src/fish_feats/ProcessFolder.py
src/fish_feats/RNASpots.py
src/fish_feats/SegmentObj.py
src/fish_feats/Separe.py
src/fish_feats/Utils.py
src/fish_feats/__init__.py
src/fish_feats/_version.py
src/fish_feats/cellpose_dask.py
src/fish_feats/napari.yaml
src/fishfeats.egg-info/PKG-INFO
src/fishfeats.egg-info/SOURCES.txt
src/fishfeats.egg-info/dependency_links.txt
src/fishfeats.egg-info/entry_points.txt
src/fishfeats.egg-info/requires.txt
src/fishfeats.egg-info/top_level.txt