LICENSE
LICENSE.txt
MANIFEST.in
README.md
setup.py
alphabase/__init__.py
alphabase/_modidx.py
alphabase/cli.py
alphabase/gui.py
alphabase/utils.py
alphabase/yaml_utils.py
alphabase.egg-info/PKG-INFO
alphabase.egg-info/SOURCES.txt
alphabase.egg-info/dependency_links.txt
alphabase.egg-info/entry_points.txt
alphabase.egg-info/requires.txt
alphabase.egg-info/top_level.txt
alphabase/__pycache__/__init__.cpython-39.pyc
alphabase/constants/__init__.py
alphabase/constants/_const.py
alphabase/constants/aa.py
alphabase/constants/atom.py
alphabase/constants/element.py
alphabase/constants/isotope.py
alphabase/constants/modification.py
alphabase/constants/const_files/__emass_element.yaml
alphabase/constants/const_files/__used_mod.yaml
alphabase/constants/const_files/amino_acid.yaml
alphabase/constants/const_files/common_constants.yaml
alphabase/constants/const_files/contaminants.fasta
alphabase/constants/const_files/modification.tsv
alphabase/constants/const_files/nist_element.yaml
alphabase/constants/const_files/protease.yaml
alphabase/constants/const_files/psm_reader.yaml
alphabase/io/__init__.py
alphabase/io/hdf.py
alphabase/io/tempmmap.py
alphabase/io/psm_reader/__init__.py
alphabase/io/psm_reader/alphapept_reader.py
alphabase/io/psm_reader/dia_psm_reader.py
alphabase/io/psm_reader/dia_search_reader.py
alphabase/io/psm_reader/maxquant_reader.py
alphabase/io/psm_reader/msfragger_reader.py
alphabase/io/psm_reader/pfind_reader.py
alphabase/io/psm_reader/psm_reader.py
alphabase/peptide/__init__.py
alphabase/peptide/fragment.py
alphabase/peptide/mass_calc.py
alphabase/peptide/mobility.py
alphabase/peptide/precursor.py
alphabase/protein/__init__.py
alphabase/protein/fasta.py
alphabase/protein/inference.py
alphabase/protein/lcp_digest.py
alphabase/protein/protein_level_decoy.py
alphabase/psm_reader/__init__.py
alphabase/psm_reader/alphapept_reader.py
alphabase/psm_reader/dia_psm_reader.py
alphabase/psm_reader/maxquant_reader.py
alphabase/psm_reader/msfragger_reader.py
alphabase/psm_reader/pfind_reader.py
alphabase/psm_reader/psm_reader.py
alphabase/scoring/__init__.py
alphabase/scoring/fdr.py
alphabase/scoring/feature_extraction_base.py
alphabase/scoring/ml_scoring.py
alphabase/spectral_library/__init__.py
alphabase/spectral_library/base.py
alphabase/spectral_library/decoy.py
alphabase/spectral_library/flat.py
alphabase/spectral_library/reader.py
alphabase/spectral_library/reader_from_raw.py
alphabase/spectral_library/translate.py
alphabase/statistics/__init__.py
alphabase/statistics/regression.py