MacSyLib documentation

MacSyLib is a Python package library that allow to model and detect macromolecular systems, genetic pathways… by similarity search in prokaryotes datasets.

Note

If you use MacSyLib please cite:

Néron, Bertrand; Denise, Rémi; Coluzzi, Charles; Touchon, Marie; Rocha, Eduardo P.C.; Abby, Sophie S. MacSyFinder v2: Improved modelling and search engine to identify molecular systems in genomes. Peer Community Journal, Volume 3 (2023), article no. e28. doi : 10.24072/pcjournal.250. https://peercommunityjournal.org/articles/10.24072/pcjournal.250/

User Guide

• User Guide
  • Using MacSyLib
  • MacSyLib functioning
  • Frequently Asked Questions

Modeller Guide

• Modeller Guide
  • Modelling Systems with MacSyLib
  • Frequently Asked Questions

Developer Guide

• Developer Guide
  • Installation
  • MacSyLib implementation overview
  • MacSyLib API documentation

Indices and tables

• Index

• Module Index

• Search Page