Modeller Guide

Modelling Systems with MacSyLib

• Installation
  • MacSyLib Installation procedure
  • Models installation with msl_data
• Models Package
  • Structure of a macsy-model package
• Macromolecular models
  • Principles, and how to write macsy-models definitions
• Helper Tool
  • msl_profile
• Publishing/sharing models
  • Writing your own macsy-model package
  • Sharing your models
• Gallery of examples of MacSyLib’s models
  • Getting started with a one-component system: the autotransporter T5SS
  • A (not-so-)simple example: modelling the T1SS
  • The case of T3SS and bacterial flagella, or how to distinguish homologous cellular machineries

Frequently Asked Questions

• Frequently Asked Questions
  • How to report an issue?
  • How to list several components or HMM profiles for a given function in the model?