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tests/data/data_set/results_1/hmmer_results/ComM_comGC.search_hmm.out
tests/data/data_set/results_1/hmmer_results/ComM_comGD.res_hmm_extract
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tests/data/data_set/results_1/hmmer_results/ComM_comGD.search_hmm.out
tests/data/data_set/results_1/hmmer_results/ComM_comGE.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/ComM_comGE.search_hmm.err
tests/data/data_set/results_1/hmmer_results/ComM_comGE.search_hmm.out
tests/data/data_set/results_1/hmmer_results/ComM_comGF.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/ComM_comGF.search_hmm.err
tests/data/data_set/results_1/hmmer_results/ComM_comGF.search_hmm.out
tests/data/data_set/results_1/hmmer_results/ComM_comGG.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/ComM_comGG.search_hmm.err
tests/data/data_set/results_1/hmmer_results/ComM_comGG.search_hmm.out
tests/data/data_set/results_1/hmmer_results/ComM_comK.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/ComM_comK.search_hmm.err
tests/data/data_set/results_1/hmmer_results/ComM_comK.search_hmm.out
tests/data/data_set/results_1/hmmer_results/ComM_comX.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/ComM_comX.search_hmm.err
tests/data/data_set/results_1/hmmer_results/ComM_comX.search_hmm.out
tests/data/data_set/results_1/hmmer_results/MSH_mshA.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/MSH_mshA.search_hmm.err
tests/data/data_set/results_1/hmmer_results/MSH_mshA.search_hmm.out
tests/data/data_set/results_1/hmmer_results/MSH_mshB.res_hmm_extract
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tests/data/data_set/results_1/hmmer_results/MSH_mshB.search_hmm.out
tests/data/data_set/results_1/hmmer_results/MSH_mshC.res_hmm_extract
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tests/data/data_set/results_1/hmmer_results/MSH_mshC.search_hmm.out
tests/data/data_set/results_1/hmmer_results/MSH_mshD.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/MSH_mshD.search_hmm.err
tests/data/data_set/results_1/hmmer_results/MSH_mshD.search_hmm.out
tests/data/data_set/results_1/hmmer_results/MSH_mshE.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/MSH_mshE.search_hmm.err
tests/data/data_set/results_1/hmmer_results/MSH_mshE.search_hmm.out
tests/data/data_set/results_1/hmmer_results/MSH_mshF.res_hmm_extract
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tests/data/data_set/results_1/hmmer_results/MSH_mshF.search_hmm.out
tests/data/data_set/results_1/hmmer_results/MSH_mshG.res_hmm_extract
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tests/data/data_set/results_1/hmmer_results/MSH_mshG.search_hmm.out
tests/data/data_set/results_1/hmmer_results/MSH_mshI.res_hmm_extract
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tests/data/data_set/results_1/hmmer_results/MSH_mshI.search_hmm.out
tests/data/data_set/results_1/hmmer_results/MSH_mshI2.res_hmm_extract
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tests/data/data_set/results_1/hmmer_results/MSH_mshI2.search_hmm.out
tests/data/data_set/results_1/hmmer_results/MSH_mshJ.res_hmm_extract
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tests/data/data_set/results_1/hmmer_results/MSH_mshK.res_hmm_extract
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tests/data/data_set/results_1/hmmer_results/MSH_mshK.search_hmm.out
tests/data/data_set/results_1/hmmer_results/MSH_mshL.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/MSH_mshL.search_hmm.err
tests/data/data_set/results_1/hmmer_results/MSH_mshL.search_hmm.out
tests/data/data_set/results_1/hmmer_results/MSH_mshM.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/MSH_mshM.search_hmm.err
tests/data/data_set/results_1/hmmer_results/MSH_mshM.search_hmm.out
tests/data/data_set/results_1/hmmer_results/MSH_mshN.res_hmm_extract
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tests/data/data_set/results_1/hmmer_results/MSH_mshO.res_hmm_extract
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tests/data/data_set/results_1/hmmer_results/MSH_mshP.res_hmm_extract
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tests/data/data_set/results_1/hmmer_results/MSH_mshQ.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/MSH_mshQ.search_hmm.err
tests/data/data_set/results_1/hmmer_results/MSH_mshQ.search_hmm.out
tests/data/data_set/results_1/hmmer_results/T2SS_gspC.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/T2SS_gspC.search_hmm.err
tests/data/data_set/results_1/hmmer_results/T2SS_gspC.search_hmm.out
tests/data/data_set/results_1/hmmer_results/T2SS_gspD.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/T2SS_gspD.search_hmm.err
tests/data/data_set/results_1/hmmer_results/T2SS_gspD.search_hmm.out
tests/data/data_set/results_1/hmmer_results/T2SS_gspE.res_hmm_extract
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tests/data/data_set/results_1/hmmer_results/T2SS_gspE.search_hmm.out
tests/data/data_set/results_1/hmmer_results/T2SS_gspF.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/T2SS_gspF.search_hmm.err
tests/data/data_set/results_1/hmmer_results/T2SS_gspF.search_hmm.out
tests/data/data_set/results_1/hmmer_results/T2SS_gspG.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/T2SS_gspG.search_hmm.err
tests/data/data_set/results_1/hmmer_results/T2SS_gspG.search_hmm.out
tests/data/data_set/results_1/hmmer_results/T2SS_gspH.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/T2SS_gspH.search_hmm.err
tests/data/data_set/results_1/hmmer_results/T2SS_gspH.search_hmm.out
tests/data/data_set/results_1/hmmer_results/T2SS_gspI.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/T2SS_gspI.search_hmm.err
tests/data/data_set/results_1/hmmer_results/T2SS_gspI.search_hmm.out
tests/data/data_set/results_1/hmmer_results/T2SS_gspJ.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/T2SS_gspJ.search_hmm.err
tests/data/data_set/results_1/hmmer_results/T2SS_gspJ.search_hmm.out
tests/data/data_set/results_1/hmmer_results/T2SS_gspK.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/T2SS_gspK.search_hmm.err
tests/data/data_set/results_1/hmmer_results/T2SS_gspK.search_hmm.out
tests/data/data_set/results_1/hmmer_results/T2SS_gspL.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/T2SS_gspL.search_hmm.err
tests/data/data_set/results_1/hmmer_results/T2SS_gspL.search_hmm.out
tests/data/data_set/results_1/hmmer_results/T2SS_gspM.res_hmm_extract
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tests/data/data_set/results_1/hmmer_results/T2SS_gspM.search_hmm.out
tests/data/data_set/results_1/hmmer_results/T2SS_gspN.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/T2SS_gspN.search_hmm.err
tests/data/data_set/results_1/hmmer_results/T2SS_gspN.search_hmm.out
tests/data/data_set/results_1/hmmer_results/T2SS_gspO.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/T2SS_gspO.search_hmm.err
tests/data/data_set/results_1/hmmer_results/T2SS_gspO.search_hmm.out
tests/data/data_set/results_1/hmmer_results/T4P_fimT.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/T4P_fimT.search_hmm.err
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tests/data/data_set/results_1/hmmer_results/T4P_pilA.res_hmm_extract
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tests/data/data_set/results_1/hmmer_results/T4P_pilB.res_hmm_extract
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tests/data/data_set/results_1/hmmer_results/T4P_pilC.res_hmm_extract
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tests/data/data_set/results_1/hmmer_results/T4P_pilC.search_hmm.out
tests/data/data_set/results_1/hmmer_results/T4P_pilD.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/T4P_pilD.search_hmm.err
tests/data/data_set/results_1/hmmer_results/T4P_pilD.search_hmm.out
tests/data/data_set/results_1/hmmer_results/T4P_pilE.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/T4P_pilE.search_hmm.err
tests/data/data_set/results_1/hmmer_results/T4P_pilE.search_hmm.out
tests/data/data_set/results_1/hmmer_results/T4P_pilM.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/T4P_pilM.search_hmm.err
tests/data/data_set/results_1/hmmer_results/T4P_pilM.search_hmm.out
tests/data/data_set/results_1/hmmer_results/T4P_pilN.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/T4P_pilN.search_hmm.err
tests/data/data_set/results_1/hmmer_results/T4P_pilN.search_hmm.out
tests/data/data_set/results_1/hmmer_results/T4P_pilO.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/T4P_pilO.search_hmm.err
tests/data/data_set/results_1/hmmer_results/T4P_pilO.search_hmm.out
tests/data/data_set/results_1/hmmer_results/T4P_pilP.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/T4P_pilP.search_hmm.err
tests/data/data_set/results_1/hmmer_results/T4P_pilP.search_hmm.out
tests/data/data_set/results_1/hmmer_results/T4P_pilQ.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/T4P_pilQ.search_hmm.err
tests/data/data_set/results_1/hmmer_results/T4P_pilQ.search_hmm.out
tests/data/data_set/results_1/hmmer_results/T4P_pilT.res_hmm_extract
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tests/data/data_set/results_1/hmmer_results/T4P_pilU.res_hmm_extract
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tests/data/data_set/results_1/hmmer_results/T4P_pilV.res_hmm_extract
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tests/data/data_set/results_1/hmmer_results/T4P_pilW.res_hmm_extract
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tests/data/data_set/results_1/hmmer_results/T4P_pilX.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/T4P_pilX.search_hmm.err
tests/data/data_set/results_1/hmmer_results/T4P_pilX.search_hmm.out
tests/data/data_set/results_1/hmmer_results/T4P_pilY.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/T4P_pilY.search_hmm.err
tests/data/data_set/results_1/hmmer_results/T4P_pilY.search_hmm.out
tests/data/data_set/results_1/hmmer_results/T4bP_pilA.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/T4bP_pilA.search_hmm.err
tests/data/data_set/results_1/hmmer_results/T4bP_pilA.search_hmm.out
tests/data/data_set/results_1/hmmer_results/T4bP_pilB.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/T4bP_pilB.search_hmm.err
tests/data/data_set/results_1/hmmer_results/T4bP_pilB.search_hmm.out
tests/data/data_set/results_1/hmmer_results/T4bP_pilC.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/T4bP_pilC.search_hmm.err
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tests/data/data_set/results_1/hmmer_results/T4bP_pilD.res_hmm_extract
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tests/data/data_set/results_1/hmmer_results/T4bP_pilE.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/T4bP_pilE.search_hmm.err
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tests/data/data_set/results_1/hmmer_results/T4bP_pilP.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/T4bP_pilP.search_hmm.err
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tests/data/data_set/results_1/hmmer_results/T4bP_pilQ.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/T4bP_pilQ.search_hmm.err
tests/data/data_set/results_1/hmmer_results/T4bP_pilQ.search_hmm.out
tests/data/data_set/results_1/hmmer_results/T4bP_pilT.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/T4bP_pilT.search_hmm.err
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tests/data/data_set/results_1/hmmer_results/Tad_flp.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/Tad_flp.search_hmm.err
tests/data/data_set/results_1/hmmer_results/Tad_flp.search_hmm.out
tests/data/data_set/results_1/hmmer_results/Tad_rcpA.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/Tad_rcpA.search_hmm.err
tests/data/data_set/results_1/hmmer_results/Tad_rcpA.search_hmm.out
tests/data/data_set/results_1/hmmer_results/Tad_rcpB.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/Tad_rcpB.search_hmm.err
tests/data/data_set/results_1/hmmer_results/Tad_rcpB.search_hmm.out
tests/data/data_set/results_1/hmmer_results/Tad_rcpC.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/Tad_rcpC.search_hmm.err
tests/data/data_set/results_1/hmmer_results/Tad_rcpC.search_hmm.out
tests/data/data_set/results_1/hmmer_results/Tad_tadA.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/Tad_tadA.search_hmm.err
tests/data/data_set/results_1/hmmer_results/Tad_tadA.search_hmm.out
tests/data/data_set/results_1/hmmer_results/Tad_tadB.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/Tad_tadB.search_hmm.err
tests/data/data_set/results_1/hmmer_results/Tad_tadB.search_hmm.out
tests/data/data_set/results_1/hmmer_results/Tad_tadC.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/Tad_tadC.search_hmm.err
tests/data/data_set/results_1/hmmer_results/Tad_tadC.search_hmm.out
tests/data/data_set/results_1/hmmer_results/Tad_tadD.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/Tad_tadD.search_hmm.err
tests/data/data_set/results_1/hmmer_results/Tad_tadD.search_hmm.out
tests/data/data_set/results_1/hmmer_results/Tad_tadE.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/Tad_tadE.search_hmm.err
tests/data/data_set/results_1/hmmer_results/Tad_tadE.search_hmm.out
tests/data/data_set/results_1/hmmer_results/Tad_tadF.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/Tad_tadF.search_hmm.err
tests/data/data_set/results_1/hmmer_results/Tad_tadF.search_hmm.out
tests/data/data_set/results_1/hmmer_results/Tad_tadV.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/Tad_tadV.search_hmm.err
tests/data/data_set/results_1/hmmer_results/Tad_tadV.search_hmm.out
tests/data/data_set/results_1/hmmer_results/Tad_tadZ.res_hmm_extract
tests/data/data_set/results_1/hmmer_results/Tad_tadZ.search_hmm.err
tests/data/data_set/results_1/hmmer_results/Tad_tadZ.search_hmm.out
tests/data/data_set/results_2/all_best_solutions.tsv
tests/data/data_set/results_2/all_systems.tsv
tests/data/data_set/results_2/all_systems.txt
tests/data/data_set/results_2/best_solution.tsv
tests/data/data_set/results_2/best_solution_loners.tsv
tests/data/data_set/results_2/best_solution_multisystems.tsv
tests/data/data_set/results_2/best_solution_summary.tsv
tests/data/data_set/results_2/macsyfinder.conf
tests/data/data_set/results_2/rejected_candidates.tsv
tests/data/data_set/results_2/rejected_candidates.txt
tests/data/data_set/results_2/hmmer_results/Archaeal-T4P_arCOG00589.res_hmm_extract
tests/data/data_set/results_2/hmmer_results/Archaeal-T4P_arCOG00589.search_hmm.err
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tests/data/data_set/results_2/hmmer_results/Archaeal-T4P_arCOG01808.res_hmm_extract
tests/data/data_set/results_2/hmmer_results/Archaeal-T4P_arCOG01808.search_hmm.err
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tests/data/data_set/results_2/hmmer_results/Archaeal-T4P_arCOG01809_IM.res_hmm_extract
tests/data/data_set/results_2/hmmer_results/Archaeal-T4P_arCOG01809_IM.search_hmm.err
tests/data/data_set/results_2/hmmer_results/Archaeal-T4P_arCOG01809_IM.search_hmm.out
tests/data/data_set/results_2/hmmer_results/Archaeal-T4P_arCOG01810.res_hmm_extract
tests/data/data_set/results_2/hmmer_results/Archaeal-T4P_arCOG01810.search_hmm.err
tests/data/data_set/results_2/hmmer_results/Archaeal-T4P_arCOG01810.search_hmm.out
tests/data/data_set/results_2/hmmer_results/Archaeal-T4P_arCOG01811.res_hmm_extract
tests/data/data_set/results_2/hmmer_results/Archaeal-T4P_arCOG01811.search_hmm.err
tests/data/data_set/results_2/hmmer_results/Archaeal-T4P_arCOG01811.search_hmm.out
tests/data/data_set/results_2/hmmer_results/Archaeal-T4P_arCOG01812.res_hmm_extract
tests/data/data_set/results_2/hmmer_results/Archaeal-T4P_arCOG01812.search_hmm.err
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tests/data/data_set/results_2/hmmer_results/Archaeal-T4P_arCOG01814.res_hmm_extract
tests/data/data_set/results_2/hmmer_results/Archaeal-T4P_arCOG01814.search_hmm.err
tests/data/data_set/results_2/hmmer_results/Archaeal-T4P_arCOG01814.search_hmm.out
tests/data/data_set/results_2/hmmer_results/Archaeal-T4P_arCOG01815.res_hmm_extract
tests/data/data_set/results_2/hmmer_results/Archaeal-T4P_arCOG01815.search_hmm.err
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tests/data/data_set/results_no_hits/hmmer_results/ComM_comK.res_hmm_extract
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tests/data/data_set/results_no_hits/hmmer_results/ComM_comX.res_hmm_extract
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tests/data/data_set/results_no_hits/hmmer_results/ComM_comX.search_hmm.out
tests/data/data_set/results_no_hits/hmmer_results/MSH_mshA.res_hmm_extract
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tests/data/data_set/results_no_hits/hmmer_results/MSH_mshB.res_hmm_extract
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tests/data/data_set/results_no_hits/hmmer_results/MSH_mshB.search_hmm.out
tests/data/data_set/results_no_hits/hmmer_results/MSH_mshC.res_hmm_extract
tests/data/data_set/results_no_hits/hmmer_results/MSH_mshC.search_hmm.err
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tests/data/data_set/results_no_hits/hmmer_results/MSH_mshD.res_hmm_extract
tests/data/data_set/results_no_hits/hmmer_results/MSH_mshD.search_hmm.err
tests/data/data_set/results_no_hits/hmmer_results/MSH_mshD.search_hmm.out
tests/data/data_set/results_no_hits/hmmer_results/MSH_mshE.res_hmm_extract
tests/data/data_set/results_no_hits/hmmer_results/MSH_mshE.search_hmm.err
tests/data/data_set/results_no_hits/hmmer_results/MSH_mshE.search_hmm.out
tests/data/data_set/results_no_hits/hmmer_results/MSH_mshF.res_hmm_extract
tests/data/data_set/results_no_hits/hmmer_results/MSH_mshF.search_hmm.err
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tests/data/data_set/results_no_hits/hmmer_results/MSH_mshG.res_hmm_extract
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tests/data/data_set/results_no_hits/hmmer_results/MSH_mshG.search_hmm.out
tests/data/data_set/results_no_hits/hmmer_results/MSH_mshI.res_hmm_extract
tests/data/data_set/results_no_hits/hmmer_results/MSH_mshI.search_hmm.err
tests/data/data_set/results_no_hits/hmmer_results/MSH_mshI.search_hmm.out
tests/data/data_set/results_no_hits/hmmer_results/MSH_mshI2.res_hmm_extract
tests/data/data_set/results_no_hits/hmmer_results/MSH_mshI2.search_hmm.err
tests/data/data_set/results_no_hits/hmmer_results/MSH_mshI2.search_hmm.out
tests/data/data_set/results_no_hits/hmmer_results/MSH_mshJ.res_hmm_extract
tests/data/data_set/results_no_hits/hmmer_results/MSH_mshJ.search_hmm.err
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tests/data/data_set/results_no_hits/hmmer_results/MSH_mshK.res_hmm_extract
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tests/data/data_set/results_no_hits/hmmer_results/MSH_mshK.search_hmm.out
tests/data/data_set/results_no_hits/hmmer_results/MSH_mshL.res_hmm_extract
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tests/data/data_set/results_no_hits/hmmer_results/MSH_mshM.res_hmm_extract
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tests/data/data_set/results_no_hits/hmmer_results/MSH_mshN.res_hmm_extract
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tests/data/data_set/results_no_hits/hmmer_results/MSH_mshO.res_hmm_extract
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tests/data/data_set/results_no_hits/hmmer_results/MSH_mshP.res_hmm_extract
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tests/data/data_set/results_no_hits/hmmer_results/MSH_mshQ.res_hmm_extract
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tests/data/data_set/results_no_hits/hmmer_results/T2SS_gspC.res_hmm_extract
tests/data/data_set/results_no_hits/hmmer_results/T2SS_gspC.search_hmm.err
tests/data/data_set/results_no_hits/hmmer_results/T2SS_gspC.search_hmm.out
tests/data/data_set/results_no_hits/hmmer_results/T2SS_gspD.res_hmm_extract
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tests/data/data_set/results_no_hits/hmmer_results/T2SS_gspE.res_hmm_extract
tests/data/data_set/results_no_hits/hmmer_results/T2SS_gspE.search_hmm.err
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tests/data/data_set/results_no_hits/hmmer_results/T2SS_gspF.res_hmm_extract
tests/data/data_set/results_no_hits/hmmer_results/T2SS_gspF.search_hmm.err
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tests/data/data_set/results_no_hits/hmmer_results/T2SS_gspG.res_hmm_extract
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tests/data/data_set/results_no_hits/hmmer_results/T2SS_gspH.res_hmm_extract
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tests/data/data_set/results_no_hits/hmmer_results/T2SS_gspI.res_hmm_extract
tests/data/data_set/results_no_hits/hmmer_results/T2SS_gspI.search_hmm.err
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tests/data/data_set/results_no_hits/hmmer_results/T2SS_gspJ.res_hmm_extract
tests/data/data_set/results_no_hits/hmmer_results/T2SS_gspJ.search_hmm.err
tests/data/data_set/results_no_hits/hmmer_results/T2SS_gspJ.search_hmm.out
tests/data/data_set/results_no_hits/hmmer_results/T2SS_gspK.res_hmm_extract
tests/data/data_set/results_no_hits/hmmer_results/T2SS_gspK.search_hmm.err
tests/data/data_set/results_no_hits/hmmer_results/T2SS_gspK.search_hmm.out
tests/data/data_set/results_no_hits/hmmer_results/T2SS_gspL.res_hmm_extract
tests/data/data_set/results_no_hits/hmmer_results/T2SS_gspL.search_hmm.err
tests/data/data_set/results_no_hits/hmmer_results/T2SS_gspL.search_hmm.out
tests/data/data_set/results_no_hits/hmmer_results/T2SS_gspM.res_hmm_extract
tests/data/data_set/results_no_hits/hmmer_results/T2SS_gspM.search_hmm.err
tests/data/data_set/results_no_hits/hmmer_results/T2SS_gspM.search_hmm.out
tests/data/data_set/results_no_hits/hmmer_results/T2SS_gspN.res_hmm_extract
tests/data/data_set/results_no_hits/hmmer_results/T2SS_gspN.search_hmm.err
tests/data/data_set/results_no_hits/hmmer_results/T2SS_gspN.search_hmm.out
tests/data/data_set/results_no_hits/hmmer_results/T2SS_gspO.res_hmm_extract
tests/data/data_set/results_no_hits/hmmer_results/T2SS_gspO.search_hmm.err
tests/data/data_set/results_no_hits/hmmer_results/T2SS_gspO.search_hmm.out
tests/data/data_set/results_no_hits/hmmer_results/T4P_fimT.res_hmm_extract
tests/data/data_set/results_no_hits/hmmer_results/T4P_fimT.search_hmm.err
tests/data/data_set/results_no_hits/hmmer_results/T4P_fimT.search_hmm.out
tests/data/data_set/results_no_hits/hmmer_results/T4P_pilA.res_hmm_extract
tests/data/data_set/results_no_hits/hmmer_results/T4P_pilA.search_hmm.err
tests/data/data_set/results_no_hits/hmmer_results/T4P_pilA.search_hmm.out
tests/data/data_set/results_no_hits/hmmer_results/T4P_pilB.res_hmm_extract
tests/data/data_set/results_no_hits/hmmer_results/T4P_pilB.search_hmm.err
tests/data/data_set/results_no_hits/hmmer_results/T4P_pilB.search_hmm.out
tests/data/data_set/results_no_hits/hmmer_results/T4P_pilC.res_hmm_extract
tests/data/data_set/results_no_hits/hmmer_results/T4P_pilC.search_hmm.err
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tests/data/data_set/results_no_hits/hmmer_results/T4P_pilD.res_hmm_extract
tests/data/data_set/results_no_hits/hmmer_results/T4P_pilD.search_hmm.err
tests/data/data_set/results_no_hits/hmmer_results/T4P_pilD.search_hmm.out
tests/data/data_set/results_no_hits/hmmer_results/T4P_pilE.res_hmm_extract
tests/data/data_set/results_no_hits/hmmer_results/T4P_pilE.search_hmm.err
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tests/data/data_set/results_no_hits/hmmer_results/T4P_pilM.res_hmm_extract
tests/data/data_set/results_no_hits/hmmer_results/T4P_pilM.search_hmm.err
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tests/data/data_set/results_no_hits/hmmer_results/T4P_pilN.res_hmm_extract
tests/data/data_set/results_no_hits/hmmer_results/T4P_pilN.search_hmm.err
tests/data/data_set/results_no_hits/hmmer_results/T4P_pilN.search_hmm.out
tests/data/data_set/results_no_hits/hmmer_results/T4P_pilO.res_hmm_extract
tests/data/data_set/results_no_hits/hmmer_results/T4P_pilO.search_hmm.err
tests/data/data_set/results_no_hits/hmmer_results/T4P_pilO.search_hmm.out
tests/data/data_set/results_no_hits/hmmer_results/T4P_pilP.res_hmm_extract
tests/data/data_set/results_no_hits/hmmer_results/T4P_pilP.search_hmm.err
tests/data/data_set/results_no_hits/hmmer_results/T4P_pilP.search_hmm.out
tests/data/data_set/results_no_hits/hmmer_results/T4P_pilQ.res_hmm_extract
tests/data/data_set/results_no_hits/hmmer_results/T4P_pilQ.search_hmm.err
tests/data/data_set/results_no_hits/hmmer_results/T4P_pilQ.search_hmm.out
tests/data/data_set/results_no_hits/hmmer_results/T4P_pilT.res_hmm_extract
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tests/data/data_set/results_no_hits/hmmer_results/T4P_pilU.res_hmm_extract
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tests/data/data_set/results_no_hits/hmmer_results/T4P_pilV.res_hmm_extract
tests/data/data_set/results_no_hits/hmmer_results/T4P_pilV.search_hmm.err
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tests/data/data_set/results_no_hits/hmmer_results/T4P_pilW.res_hmm_extract
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tests/data/data_set/results_no_hits/hmmer_results/T4P_pilX.res_hmm_extract
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tests/data/data_set/results_no_hits/hmmer_results/T4P_pilY.res_hmm_extract
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tests/data/data_set/results_no_hits/hmmer_results/T4bP_pilA.res_hmm_extract
tests/data/data_set/results_no_hits/hmmer_results/T4bP_pilA.search_hmm.err
tests/data/data_set/results_no_hits/hmmer_results/T4bP_pilA.search_hmm.out
tests/data/data_set/results_no_hits/hmmer_results/T4bP_pilB.res_hmm_extract
tests/data/data_set/results_no_hits/hmmer_results/T4bP_pilB.search_hmm.err
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tests/data/data_set/results_no_hits/hmmer_results/T4bP_pilC.res_hmm_extract
tests/data/data_set/results_no_hits/hmmer_results/T4bP_pilC.search_hmm.err
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tests/data/data_set/results_no_hits/hmmer_results/T4bP_pilD.res_hmm_extract
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tests/data/data_set/results_no_hits/hmmer_results/T4bP_pilE.res_hmm_extract
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tests/data/data_set/results_no_hits/hmmer_results/T4bP_pilT.res_hmm_extract
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tests/data/data_set/results_no_hits/hmmer_results/Tad_flp.res_hmm_extract
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tests/data/data_set/results_no_hits/hmmer_results/Tad_rcpA.res_hmm_extract
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tests/data/data_set/results_no_hits/hmmer_results/Tad_rcpB.res_hmm_extract
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tests/data/data_set/results_no_hits/hmmer_results/Tad_rcpC.res_hmm_extract
tests/data/data_set/results_no_hits/hmmer_results/Tad_rcpC.search_hmm.err
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tests/data/data_set/results_no_hits/hmmer_results/Tad_tadA.res_hmm_extract
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tests/data/data_set/results_no_hits/hmmer_results/Tad_tadB.res_hmm_extract
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tests/data/data_set/results_no_hits/hmmer_results/Tad_tadC.res_hmm_extract
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tests/data/data_set/results_no_hits/hmmer_results/Tad_tadD.res_hmm_extract
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tests/data/data_set/results_no_hits/hmmer_results/Tad_tadE.res_hmm_extract
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tests/data/data_set/results_no_hits/hmmer_results/Tad_tadF.res_hmm_extract
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tests/data/data_set/results_no_hits/hmmer_results/Tad_tadV.res_hmm_extract
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tests/data/data_set/results_no_hits/hmmer_results/Tad_tadZ.res_hmm_extract
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tests/data/data_set/results_no_hits/hmmer_results/Tad_tadZ.search_hmm.out
tests/data/fake_model_dir/set_1/metadata.yml
tests/data/fake_model_dir/set_1/definitions/def_1_1.xml
tests/data/fake_model_dir/set_1/definitions/def_1_2.xml
tests/data/fake_model_dir/set_1/definitions/def_1_3.xml
tests/data/fake_model_dir/set_1/definitions/def_1_4.xml
tests/data/fake_model_dir/set_1/profiles/profile_A.hmm
tests/data/fake_model_dir/set_2/metadata.yml
tests/data/fake_model_dir/set_2/definitions/level_1/def_1_1.xml
tests/data/fake_model_dir/set_2/definitions/level_1/def_1_2.xml
tests/data/fake_model_dir/set_2/definitions/level_1/level_2/def_2_3.xml
tests/data/fake_model_dir/set_2/definitions/level_1/level_2/def_2_4.xml
tests/data/fake_model_dir/set_2/profiles/profile_A.hmm
tests/data/functional_test_degenerated_systems/all_best_solutions.tsv
tests/data/functional_test_degenerated_systems/all_systems.tsv
tests/data/functional_test_degenerated_systems/all_systems.txt
tests/data/functional_test_degenerated_systems/best_solution.tsv
tests/data/functional_test_degenerated_systems/best_solution_loners.tsv
tests/data/functional_test_degenerated_systems/best_solution_multisystems.tsv
tests/data/functional_test_degenerated_systems/best_solution_summary.tsv
tests/data/functional_test_degenerated_systems/macsylib.conf
tests/data/functional_test_degenerated_systems/rejected_candidates.tsv
tests/data/functional_test_degenerated_systems/rejected_candidates.txt
tests/data/functional_test_degenerated_systems/hmmer_results/T1SS_mfp.res_hmm_extract
tests/data/functional_test_degenerated_systems/hmmer_results/T1SS_mfp.search_hmm.err
tests/data/functional_test_degenerated_systems/hmmer_results/T1SS_mfp.search_hmm.out
tests/data/functional_test_degenerated_systems/hmmer_results/T2SS_gspD.res_hmm_extract
tests/data/functional_test_degenerated_systems/hmmer_results/T2SS_gspD.search_hmm.err
tests/data/functional_test_degenerated_systems/hmmer_results/T2SS_gspD.search_hmm.out
tests/data/functional_test_gembase/all_best_solutions.tsv
tests/data/functional_test_gembase/all_systems.tsv
tests/data/functional_test_gembase/all_systems.txt
tests/data/functional_test_gembase/best_solution.tsv
tests/data/functional_test_gembase/best_solution_loners.tsv
tests/data/functional_test_gembase/best_solution_multisystems.tsv
tests/data/functional_test_gembase/best_solution_summary.tsv
tests/data/functional_test_gembase/macsyfinder.conf
tests/data/functional_test_gembase/rejected_candidates.tsv
tests/data/functional_test_gembase/rejected_candidates.txt
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG00589.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG00589.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG00589.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG01808.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG01808.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG01808.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG01809_IM.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG01809_IM.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG01809_IM.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG01810.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG01810.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG01810.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG01811.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG01811.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG01811.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG01812.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG01812.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG01812.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG01814.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG01814.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG01814.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG01815.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG01815.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG01815.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG01817_ATP.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG01817_ATP.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG01817_ATP.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG01818.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG01818.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG01818.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG01822.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG01822.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG01822.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG01824.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG01824.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG01824.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG01829_Pil.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG01829_Pil.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG01829_Pil.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02298_PP.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02298_PP.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02298_PP.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02300.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02300.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02300.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02394.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02394.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02394.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02396.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02396.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02396.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02416.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02416.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02416.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02419.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02419.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02419.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02420.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02420.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02420.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02421.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02421.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02421.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02900.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02900.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02900.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02911.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02911.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02911.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02916.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02916.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02916.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02963.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02963.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02963.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02964.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02964.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02964.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02981.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02981.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG02981.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG03360.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG03360.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG03360.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG03422.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG03422.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG03422.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG03511.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG03511.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG03511.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG03870.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG03870.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG03870.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG03871.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG03871.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG03871.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG03872.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG03872.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG03872.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG03926.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG03926.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG03926.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG03933.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG03933.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG03933.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG04148.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG04148.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG04148.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG04652.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG04652.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG04652.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG04673.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG04673.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG04673.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG04679.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG04679.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG04679.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG04680.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG04680.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG04680.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05057.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05057.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05057.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05085.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05085.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05085.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05119.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05119.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05119.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05166.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05166.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05166.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05475.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05475.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05475.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05608.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05608.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05608.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05609.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05609.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05609.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05610.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05610.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05610.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05611.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05611.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05611.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05612.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05612.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05612.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05613.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05613.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05613.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05614.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05614.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05614.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05615.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05615.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05615.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05616.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05616.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05616.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05617.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05617.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05617.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05618.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05618.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05618.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05619.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05619.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05619.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05986.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05986.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05986.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05987.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05987.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG05987.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG06117.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG06117.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG06117.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG06141.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG06141.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG06141.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG06291.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG06291.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG06291.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG06296.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG06296.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG06296.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG06335.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG06335.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG06335.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG06517.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG06517.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG06517.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG06518.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG06518.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG06518.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG06552.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG06552.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG06552.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG06584.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG06584.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG06584.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG06599.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG06599.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG06599.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG06620.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG06620.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG06620.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG06912.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG06912.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG06912.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG07037.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG07037.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG07037.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG07206.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG07206.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG07206.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG07276.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG07276.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG07276.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG07478.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG07478.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG07478.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG07564.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG07564.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG07564.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG07613.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG07613.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG07613.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG07777.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG07777.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG07777.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG08058.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG08058.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG08058.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG08268.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG08268.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG08268.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG08269.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG08269.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG08269.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG08270.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG08270.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG08270.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG08271.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG08271.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG08271.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG08272.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG08272.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG08272.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG08273.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG08273.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG08273.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG08521.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG08521.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG08521.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG08522.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG08522.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG08522.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG08524.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG08524.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG08524.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG08836.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG08836.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG08836.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG08837.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG08837.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG08837.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG09150.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG09150.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG09150.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG09549.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG09549.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG09549.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG09683.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG09683.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG09683.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG10216.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG10216.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG10216.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG10426.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG10426.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG10426.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG10477.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG10477.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG10477.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG11238.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG11238.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG11238.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG11520.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG11520.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG11520.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG11777.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG11777.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG11777.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG11778.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG11778.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG11778.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG11936.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG11936.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG11936.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG14515.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG14515.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Archaeal-T4P_arCOG14515.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/ComM_comB.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/ComM_comB.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/ComM_comB.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/ComM_comC.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/ComM_comC.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/ComM_comC.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/ComM_comEA.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/ComM_comEA.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/ComM_comEA.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/ComM_comEB.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/ComM_comEB.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/ComM_comEB.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/ComM_comEC.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/ComM_comEC.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/ComM_comEC.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/ComM_comGA.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/ComM_comGA.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/ComM_comGA.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/ComM_comGB.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/ComM_comGB.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/ComM_comGB.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/ComM_comGC.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/ComM_comGC.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/ComM_comGC.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/ComM_comGD.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/ComM_comGD.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/ComM_comGD.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/ComM_comGE.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/ComM_comGE.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/ComM_comGE.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/ComM_comGF.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/ComM_comGF.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/ComM_comGF.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/ComM_comGG.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/ComM_comGG.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/ComM_comGG.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/ComM_comK.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/ComM_comK.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/ComM_comK.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/ComM_comX.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/ComM_comX.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/ComM_comX.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/MSH_mshA.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/MSH_mshA.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/MSH_mshA.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/MSH_mshB.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/MSH_mshB.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/MSH_mshB.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/MSH_mshC.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/MSH_mshC.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/MSH_mshC.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/MSH_mshD.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/MSH_mshD.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/MSH_mshD.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/MSH_mshE.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/MSH_mshE.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/MSH_mshE.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/MSH_mshF.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/MSH_mshF.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/MSH_mshF.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/MSH_mshG.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/MSH_mshG.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/MSH_mshG.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/MSH_mshI.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/MSH_mshI.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/MSH_mshI.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/MSH_mshI2.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/MSH_mshI2.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/MSH_mshI2.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/MSH_mshJ.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/MSH_mshJ.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/MSH_mshJ.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/MSH_mshK.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/MSH_mshK.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/MSH_mshK.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/MSH_mshL.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/MSH_mshL.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/MSH_mshL.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/MSH_mshM.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/MSH_mshM.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/MSH_mshM.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/MSH_mshN.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/MSH_mshN.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/MSH_mshN.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/MSH_mshO.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/MSH_mshO.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/MSH_mshO.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/MSH_mshP.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/MSH_mshP.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/MSH_mshP.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/MSH_mshQ.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/MSH_mshQ.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/MSH_mshQ.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/T2SS_gspC.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/T2SS_gspC.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/T2SS_gspC.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/T2SS_gspD.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/T2SS_gspD.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/T2SS_gspD.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/T2SS_gspE.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/T2SS_gspE.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/T2SS_gspE.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/T2SS_gspF.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/T2SS_gspF.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/T2SS_gspF.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/T2SS_gspG.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/T2SS_gspG.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/T2SS_gspG.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/T2SS_gspH.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/T2SS_gspH.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/T2SS_gspH.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/T2SS_gspI.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/T2SS_gspI.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/T2SS_gspI.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/T2SS_gspJ.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/T2SS_gspJ.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/T2SS_gspJ.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/T2SS_gspK.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/T2SS_gspK.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/T2SS_gspK.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/T2SS_gspL.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/T2SS_gspL.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/T2SS_gspL.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/T2SS_gspM.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/T2SS_gspM.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/T2SS_gspM.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/T2SS_gspN.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/T2SS_gspN.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/T2SS_gspN.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/T2SS_gspO.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/T2SS_gspO.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/T2SS_gspO.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/T4P_fimT.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/T4P_fimT.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/T4P_fimT.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/T4P_pilA.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/T4P_pilA.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/T4P_pilA.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/T4P_pilB.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/T4P_pilB.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/T4P_pilB.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/T4P_pilC.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/T4P_pilC.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/T4P_pilC.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/T4P_pilD.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/T4P_pilD.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/T4P_pilD.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/T4P_pilE.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/T4P_pilE.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/T4P_pilE.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/T4P_pilM.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/T4P_pilM.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/T4P_pilM.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/T4P_pilN.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/T4P_pilN.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/T4P_pilN.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/T4P_pilO.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/T4P_pilO.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/T4P_pilO.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/T4P_pilP.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/T4P_pilP.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/T4P_pilP.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/T4P_pilQ.res_hmm_extract
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tests/data/functional_test_gembase/hmmer_results/T4P_pilT.res_hmm_extract
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tests/data/functional_test_gembase/hmmer_results/T4P_pilU.res_hmm_extract
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tests/data/functional_test_gembase/hmmer_results/T4P_pilV.res_hmm_extract
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tests/data/functional_test_gembase/hmmer_results/T4P_pilV.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/T4P_pilW.res_hmm_extract
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tests/data/functional_test_gembase/hmmer_results/T4P_pilW.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/T4P_pilX.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/T4P_pilX.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/T4P_pilX.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/T4P_pilY.res_hmm_extract
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tests/data/functional_test_gembase/hmmer_results/T4P_pilY.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/T4bP_pilA.res_hmm_extract
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tests/data/functional_test_gembase/hmmer_results/T4bP_pilA.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/T4bP_pilB.res_hmm_extract
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tests/data/functional_test_gembase/hmmer_results/T4bP_pilB.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/T4bP_pilC.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/T4bP_pilC.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/T4bP_pilC.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/T4bP_pilD.res_hmm_extract
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tests/data/functional_test_gembase/hmmer_results/T4bP_pilD.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/T4bP_pilE.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/T4bP_pilE.search_hmm.err
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tests/data/functional_test_gembase/hmmer_results/T4bP_pilP.res_hmm_extract
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tests/data/functional_test_gembase/hmmer_results/T4bP_pilQ.res_hmm_extract
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tests/data/functional_test_gembase/hmmer_results/T4bP_pilT.res_hmm_extract
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tests/data/functional_test_gembase/hmmer_results/Tad_flp.res_hmm_extract
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tests/data/functional_test_gembase/hmmer_results/Tad_flp.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Tad_rcpA.res_hmm_extract
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tests/data/functional_test_gembase/hmmer_results/Tad_rcpB.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Tad_rcpB.search_hmm.err
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tests/data/functional_test_gembase/hmmer_results/Tad_rcpC.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Tad_rcpC.search_hmm.err
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tests/data/functional_test_gembase/hmmer_results/Tad_tadA.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Tad_tadA.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Tad_tadA.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Tad_tadB.res_hmm_extract
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tests/data/functional_test_gembase/hmmer_results/Tad_tadB.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Tad_tadC.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Tad_tadC.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Tad_tadC.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Tad_tadD.res_hmm_extract
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tests/data/functional_test_gembase/hmmer_results/Tad_tadD.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Tad_tadE.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Tad_tadE.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Tad_tadE.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Tad_tadF.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Tad_tadF.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Tad_tadF.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Tad_tadV.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Tad_tadV.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Tad_tadV.search_hmm.out
tests/data/functional_test_gembase/hmmer_results/Tad_tadZ.res_hmm_extract
tests/data/functional_test_gembase/hmmer_results/Tad_tadZ.search_hmm.err
tests/data/functional_test_gembase/hmmer_results/Tad_tadZ.search_hmm.out
tests/data/hmm/flp.res_hmm_extract
tests/data/hmm/flp.search_hmm.out
tests/data/hmm/gspC.res_hmm_extract
tests/data/hmm/gspC.search_hmm.out
tests/data/hmm/gspD.res_hmm_extract
tests/data/hmm/gspD.search_hmm.out
tests/data/hmm/gspE.res_hmm_extract
tests/data/hmm/gspE.search_hmm.out
tests/data/hmm/gspF.res_hmm_extract
tests/data/hmm/gspF.search_hmm.out
tests/data/hmm/gspG.res_hmm_extract
tests/data/hmm/gspG.search_hmm.out
tests/data/hmm/gspH.res_hmm_extract
tests/data/hmm/gspH.search_hmm.out
tests/data/hmm/gspI.res_hmm_extract
tests/data/hmm/gspI.search_hmm.out
tests/data/hmm/gspJ.res_hmm_extract
tests/data/hmm/gspJ.search_hmm.out
tests/data/hmm/gspK.res_hmm_extract
tests/data/hmm/gspK.search_hmm.out
tests/data/hmm/gspL.res_hmm_extract
tests/data/hmm/gspL.search_hmm.out
tests/data/hmm/gspM.res_hmm_extract
tests/data/hmm/gspM.search_hmm.out
tests/data/hmm/gspO.res_hmm_extract
tests/data/hmm/gspO.search_hmm.out
tests/data/hmm/old_profile.hmm
tests/data/hmm/one_profile.hmm
tests/data/hmm/pilAE.res_hmm_extract
tests/data/hmm/pilAE.search_hmm.out
tests/data/hmm/pilB.res_hmm_extract
tests/data/hmm/pilB.search_hmm.out
tests/data/hmm/pilC.res_hmm_extract
tests/data/hmm/pilC.search_hmm.out
tests/data/hmm/pilD.res_hmm_extract
tests/data/hmm/pilD.search_hmm.out
tests/data/hmm/pilI_pilV.res_hmm_extract
tests/data/hmm/pilI_pilV.search_hmm.out
tests/data/hmm/pilM.res_hmm_extract
tests/data/hmm/pilM.search_hmm.out
tests/data/hmm/pilN.res_hmm_extract
tests/data/hmm/pilN.search_hmm.out
tests/data/hmm/pilO.res_hmm_extract
tests/data/hmm/pilO.search_hmm.out
tests/data/hmm/pilP.res_hmm_extract
tests/data/hmm/pilP.search_hmm.out
tests/data/hmm/pilQ.res_hmm_extract
tests/data/hmm/pilQ.search_hmm.out
tests/data/hmm/pilT_pilU.res_hmm_extract
tests/data/hmm/pilT_pilU.search_hmm.out
tests/data/hmm/rcpA.res_hmm_extract
tests/data/hmm/rcpA.search_hmm.out
tests/data/hmm/several_profiles.hmm
tests/data/hmm/tadA.res_hmm_extract
tests/data/hmm/tadA.search_hmm.out
tests/data/hmm/tadB.res_hmm_extract
tests/data/hmm/tadB.search_hmm.out
tests/data/hmm/tadC.res_hmm_extract
tests/data/hmm/tadC.search_hmm.out
tests/data/hmm/tadD.res_hmm_extract
tests/data/hmm/tadD.search_hmm.out
tests/data/hmm/tadE.res_hmm_extract
tests/data/hmm/tadE.search_hmm.out
tests/data/hmm/tadF.res_hmm_extract
tests/data/hmm/tadF.search_hmm.out
tests/data/hmm/tadV.res_hmm_extract
tests/data/hmm/tadV.search_hmm.out
tests/data/hmm/tadZ.res_hmm_extract
tests/data/hmm/tadZ.search_hmm.out
tests/data/init_pack/COPYRIGHT
tests/data/init_pack/LICENSE
tests/data/init_pack/README.md
tests/data/init_pack/metadata.yml
tests/data/init_pack/model_conf.xml
tests/data/init_pack/definitions/model_example.xml
tests/data/init_pack_license/COPYRIGHT
tests/data/init_pack_license/LICENSE
tests/data/init_pack_license/README.md
tests/data/init_pack_license/metadata.yml
tests/data/init_pack_license/model_conf.xml
tests/data/init_pack_license/definitions/model_example.xml
tests/data/minimal_pack/README.md
tests/data/minimal_pack/metadata.yml
tests/data/minimal_pack/model_conf.xml
tests/data/minimal_pack/definitions/model_example.xml
tests/data/models/Model_w_conf/metadata.yml
tests/data/models/Model_w_conf/model_conf.xml
tests/data/models/Model_w_conf/definitions/degenerated_systems.xml
tests/data/models/Model_w_conf/definitions/uncomplete_degenerated_systems.xml
tests/data/models/Model_w_conf/profiles/T1SS_mfp.hmm
tests/data/models/Model_w_conf/profiles/T2SS_gspD.hmm
tests/data/models/TFF-SF/metadata.yml
tests/data/models/TFF-SF/model_conf.xml
tests/data/models/TFF-SF/definitions/Archaeal-T4P.xml
tests/data/models/TFF-SF/definitions/ComM.xml
tests/data/models/TFF-SF/definitions/MSH.xml
tests/data/models/TFF-SF/definitions/T2SS.xml
tests/data/models/TFF-SF/definitions/T4P.xml
tests/data/models/TFF-SF/definitions/T4bP.xml
tests/data/models/TFF-SF/definitions/Tad.xml
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG00589.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG01808.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG01809.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG01809_IM.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG01810.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG01811.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG01812.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG01814.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG01815.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG01817.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG01817_ATP.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG01818.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG01819.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG01822.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG01824.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG01829.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG01829_Pil.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG02298.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG02298_PP.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG02300.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG02394.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG02396.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG02416.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG02417.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG02419.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG02420.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG02421.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG02423.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG02424.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG02425.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG02426.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG02900.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG02911.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG02916.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG02963.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG02964.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG02966.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG02981.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG03052.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG03360.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG03421.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG03422.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG03511.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG03739.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG03740.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG03821.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG03822.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG03870.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG03871.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG03872.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG03926.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG03933.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG04026.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG04148.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG04652.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG04673.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG04679.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG04680.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG04976.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG05039.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG05040.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG05053.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG05054.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG05055.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG05057.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG05082.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG05085.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG05119.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG05165.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG05166.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG05167.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG05285.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG05300.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG05458.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG05473.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG05474.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG05475.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG05557.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG05558.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG05608.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG05609.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG05610.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG05611.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG05612.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG05613.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG05614.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG05615.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG05616.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG05617.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG05618.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG05619.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG05786.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG05787.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG05788.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG05789.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG05790.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG05841.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG05986.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG05987.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG06117.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG06141.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG06291.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG06296.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG06335.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG06473.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG06495.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG06517.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG06518.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG06552.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG06562.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG06584.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG06599.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG06620.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG06626.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG06686.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG06912.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG07006.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG07007.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG07036.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG07037.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG07206.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG07276.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG07367.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG07380.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG07433.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG07434.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG07447.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG07478.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG07564.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG07604.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG07613.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG07777.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG07792.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG08058.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG08085.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG08176.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG08227.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG08234.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG08268.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG08269.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG08270.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG08271.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG08272.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG08273.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG08521.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG08522.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG08524.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG08836.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG08837.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG09029.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG09150.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG09299.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG09301.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG09549.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG09604.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG09683.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG09726.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG10170.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG10216.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG10249.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG10347.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG10348.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG10359.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG10426.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG10451.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG10477.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG10497.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG10500.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG10501.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG10502.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG10503.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG10504.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG10615.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG10832.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG10841.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG10986.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG11030.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG11208.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG11238.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG11438.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG11520.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG11777.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG11778.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG11936.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG11939.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG12314.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG12378.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG12459.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG12673.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG13203.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG13767.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG13822.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG13823.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG13890.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG13919.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG14085.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG14515.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG14516.hmm
tests/data/models/TFF-SF/profiles/Archaeal-T4P_arCOG14961.hmm
tests/data/models/TFF-SF/profiles/ComM_comB.hmm
tests/data/models/TFF-SF/profiles/ComM_comC.hmm
tests/data/models/TFF-SF/profiles/ComM_comEA.hmm
tests/data/models/TFF-SF/profiles/ComM_comEB.hmm
tests/data/models/TFF-SF/profiles/ComM_comEC.hmm
tests/data/models/TFF-SF/profiles/ComM_comFA.hmm
tests/data/models/TFF-SF/profiles/ComM_comFC.hmm
tests/data/models/TFF-SF/profiles/ComM_comGA.hmm
tests/data/models/TFF-SF/profiles/ComM_comGB.hmm
tests/data/models/TFF-SF/profiles/ComM_comGC.hmm
tests/data/models/TFF-SF/profiles/ComM_comGD.hmm
tests/data/models/TFF-SF/profiles/ComM_comGE.hmm
tests/data/models/TFF-SF/profiles/ComM_comGF.hmm
tests/data/models/TFF-SF/profiles/ComM_comGG.hmm
tests/data/models/TFF-SF/profiles/ComM_comK.hmm
tests/data/models/TFF-SF/profiles/ComM_comX.hmm
tests/data/models/TFF-SF/profiles/Com_comEA.hmm
tests/data/models/TFF-SF/profiles/Com_comEB.hmm
tests/data/models/TFF-SF/profiles/Com_comEC.hmm
tests/data/models/TFF-SF/profiles/MSH_mshA.hmm
tests/data/models/TFF-SF/profiles/MSH_mshB.hmm
tests/data/models/TFF-SF/profiles/MSH_mshC.hmm
tests/data/models/TFF-SF/profiles/MSH_mshD.hmm
tests/data/models/TFF-SF/profiles/MSH_mshE.hmm
tests/data/models/TFF-SF/profiles/MSH_mshF.hmm
tests/data/models/TFF-SF/profiles/MSH_mshG.hmm
tests/data/models/TFF-SF/profiles/MSH_mshH.hmm
tests/data/models/TFF-SF/profiles/MSH_mshI.hmm
tests/data/models/TFF-SF/profiles/MSH_mshI2.hmm
tests/data/models/TFF-SF/profiles/MSH_mshI3.hmm
tests/data/models/TFF-SF/profiles/MSH_mshJ.hmm
tests/data/models/TFF-SF/profiles/MSH_mshK.hmm
tests/data/models/TFF-SF/profiles/MSH_mshL.hmm
tests/data/models/TFF-SF/profiles/MSH_mshM.hmm
tests/data/models/TFF-SF/profiles/MSH_mshN.hmm
tests/data/models/TFF-SF/profiles/MSH_mshO.hmm
tests/data/models/TFF-SF/profiles/MSH_mshP.hmm
tests/data/models/TFF-SF/profiles/MSH_mshQ.hmm
tests/data/models/TFF-SF/profiles/T2SS_gspC.hmm
tests/data/models/TFF-SF/profiles/T2SS_gspD.hmm
tests/data/models/TFF-SF/profiles/T2SS_gspE.hmm
tests/data/models/TFF-SF/profiles/T2SS_gspF.hmm
tests/data/models/TFF-SF/profiles/T2SS_gspG.hmm
tests/data/models/TFF-SF/profiles/T2SS_gspH.hmm
tests/data/models/TFF-SF/profiles/T2SS_gspI.hmm
tests/data/models/TFF-SF/profiles/T2SS_gspJ.hmm
tests/data/models/TFF-SF/profiles/T2SS_gspK.hmm
tests/data/models/TFF-SF/profiles/T2SS_gspL.hmm
tests/data/models/TFF-SF/profiles/T2SS_gspM.hmm
tests/data/models/TFF-SF/profiles/T2SS_gspN.hmm
tests/data/models/TFF-SF/profiles/T2SS_gspO.hmm
tests/data/models/TFF-SF/profiles/T4P_fimT.hmm
tests/data/models/TFF-SF/profiles/T4P_pilA.hmm
tests/data/models/TFF-SF/profiles/T4P_pilAE.hmm
tests/data/models/TFF-SF/profiles/T4P_pilB.hmm
tests/data/models/TFF-SF/profiles/T4P_pilC.hmm
tests/data/models/TFF-SF/profiles/T4P_pilD.hmm
tests/data/models/TFF-SF/profiles/T4P_pilD_bak.hmm
tests/data/models/TFF-SF/profiles/T4P_pilE.hmm
tests/data/models/TFF-SF/profiles/T4P_pilM.hmm
tests/data/models/TFF-SF/profiles/T4P_pilN.hmm
tests/data/models/TFF-SF/profiles/T4P_pilO.hmm
tests/data/models/TFF-SF/profiles/T4P_pilP.hmm
tests/data/models/TFF-SF/profiles/T4P_pilQ.hmm
tests/data/models/TFF-SF/profiles/T4P_pilT.hmm
tests/data/models/TFF-SF/profiles/T4P_pilU.hmm
tests/data/models/TFF-SF/profiles/T4P_pilV.hmm
tests/data/models/TFF-SF/profiles/T4P_pilW.hmm
tests/data/models/TFF-SF/profiles/T4P_pilX.hmm
tests/data/models/TFF-SF/profiles/T4P_pilY.hmm
tests/data/models/TFF-SF/profiles/T4P_pilZ.hmm
tests/data/models/TFF-SF/profiles/T4P_pilotin.hmm
tests/data/models/TFF-SF/profiles/T4bP_pilA.hmm
tests/data/models/TFF-SF/profiles/T4bP_pilB.hmm
tests/data/models/TFF-SF/profiles/T4bP_pilC.hmm
tests/data/models/TFF-SF/profiles/T4bP_pilD.hmm
tests/data/models/TFF-SF/profiles/T4bP_pilE.hmm
tests/data/models/TFF-SF/profiles/T4bP_pilM.hmm
tests/data/models/TFF-SF/profiles/T4bP_pilN.hmm
tests/data/models/TFF-SF/profiles/T4bP_pilO.hmm
tests/data/models/TFF-SF/profiles/T4bP_pilP.hmm
tests/data/models/TFF-SF/profiles/T4bP_pilQ.hmm
tests/data/models/TFF-SF/profiles/T4bP_pilT.hmm
tests/data/models/TFF-SF/profiles/Tad_flp.hmm
tests/data/models/TFF-SF/profiles/Tad_rcpA.hmm
tests/data/models/TFF-SF/profiles/Tad_rcpB.hmm
tests/data/models/TFF-SF/profiles/Tad_rcpC.hmm
tests/data/models/TFF-SF/profiles/Tad_tadA.hmm
tests/data/models/TFF-SF/profiles/Tad_tadB.hmm
tests/data/models/TFF-SF/profiles/Tad_tadC.hmm
tests/data/models/TFF-SF/profiles/Tad_tadD.hmm
tests/data/models/TFF-SF/profiles/Tad_tadE.hmm
tests/data/models/TFF-SF/profiles/Tad_tadF.hmm
tests/data/models/TFF-SF/profiles/Tad_tadG.hmm
tests/data/models/TFF-SF/profiles/Tad_tadV.hmm
tests/data/models/TFF-SF/profiles/Tad_tadZ.hmm
tests/data/models/foo/metadata.yml
tests/data/models/foo/definitions/bad_exchangeable_inter_gene_max_space.xml
tests/data/models/foo/definitions/bad_inter_gene_max_space.xml
tests/data/models/foo/definitions/bad_inter_gene_max_space_2.xml
tests/data/models/foo/definitions/bad_max_nb_genes.xml
tests/data/models/foo/definitions/bad_min_genes_required.xml
tests/data/models/foo/definitions/bad_min_genes_required_2.xml
tests/data/models/foo/definitions/bad_min_mandatory_genes_required.xml
tests/data/models/foo/definitions/bad_min_mandatory_genes_required_2.xml
tests/data/models/foo/definitions/bad_min_mandatory_genes_required_3.xml
tests/data/models/foo/definitions/bad_min_mandatory_genes_required_4.xml
tests/data/models/foo/definitions/compressed_profile.xml
tests/data/models/foo/definitions/fail_invalid_presence.xml
tests/data/models/foo/definitions/fail_wo_presence.xml
tests/data/models/foo/definitions/gene_no_name.xml
tests/data/models/foo/definitions/gene_w_unknown_attribute.xml
tests/data/models/foo/definitions/invalid_homolog.xml
tests/data/models/foo/definitions/invalid_homolog_2.xml
tests/data/models/foo/definitions/model_1.xml
tests/data/models/foo/definitions/model_2.xml
tests/data/models/foo/definitions/model_3.xml
tests/data/models/foo/definitions/model_4.xml
tests/data/models/foo/definitions/model_5.xml
tests/data/models/foo/definitions/model_6.xml
tests/data/models/foo/definitions/model_old_1.xml
tests/data/models/foo/definitions/model_old_2.xml
tests/data/models/foo/definitions/model_old_3.xml
tests/data/models/foo/definitions/model_old_4.xml
tests/data/models/foo/definitions/model_old_5.xml
tests/data/models/foo/definitions/model_w_unknown_attribute.xml
tests/data/models/foo/definitions/no_inter_gene_max_space.xml
tests/data/models/foo/definitions/not_xml.xml
tests/data/models/foo/definitions/only_one_accessory.xml
tests/data/models/foo/profiles/PF05930.13.hmm
tests/data/models/foo/profiles/T5aSS_PF03797.hmm
tests/data/models/foo/profiles/abc.hmm
tests/data/models/foo/profiles/bad_GA.hmm
tests/data/models/foo/profiles/bad_GA_2.hmm
tests/data/models/foo/profiles/bad_ext.hmm.gz
tests/data/models/foo/profiles/bz2.hmm.bz2
tests/data/models/foo/profiles/flgB.hmm
tests/data/models/foo/profiles/flgC.hmm
tests/data/models/foo/profiles/fliE.hmm
tests/data/models/foo/profiles/gspD.hmm
tests/data/models/foo/profiles/gzip.hmm.gz
tests/data/models/foo/profiles/sctC.hmm
tests/data/models/foo/profiles/sctJ.hmm
tests/data/models/foo/profiles/sctJ_FLG.hmm
tests/data/models/foo/profiles/sctN.hmm
tests/data/models/foo/profiles/sctN_FLG.hmm
tests/data/models/foo/profiles/tadZ.hmm
tests/data/models/foo/profiles/toto.hmm
tests/data/models/foo/profiles/totote.hmm
tests/data/models/foo/profiles/zip.hmm.zip
tests/data/models/functional/metadata.yml
tests/data/models/functional/definitions/A.xml
tests/data/models/functional/definitions/B.xml
tests/data/models/functional/definitions/C_multi_model.xml
tests/data/models/functional/definitions/C_no_multi_model.xml
tests/data/models/functional/definitions/D_multi_model.xml
tests/data/models/functional/definitions/T12SS-forbidden.xml
tests/data/models/functional/definitions/T12SS-loner-exch.xml
tests/data/models/functional/definitions/T12SS-loner-multisystem.xml
tests/data/models/functional/definitions/T12SS-loner.xml
tests/data/models/functional/definitions/T12SS-multisystem.xml
tests/data/models/functional/definitions/T12SS-simple-exch-neutr.xml
tests/data/models/functional/definitions/T12SS-simple-exch.xml
tests/data/models/functional/definitions/T12SS-simple.xml
tests/data/models/functional/definitions/T12SS.xml
tests/data/models/functional/definitions/degenerated_systems.xml
tests/data/models/functional/definitions/uncomplete_degenerated_systems.xml
tests/data/models/functional/profiles/T1SS_abc.hmm
tests/data/models/functional/profiles/T1SS_mfp.hmm
tests/data/models/functional/profiles/T1SS_omf.hmm
tests/data/models/functional/profiles/T2SS_gspD.hmm
tests/data/models/functional/profiles/T2SS_gspF.hmm
tests/data/models/functional/profiles/T4P_pilB.hmm
tests/data/models/functional/profiles/T4P_pilW.hmm
tests/data/models/functional_gzip/metadata.yml
tests/data/models/functional_gzip/definitions/A.xml
tests/data/models/functional_gzip/definitions/B.xml
tests/data/models/functional_gzip/definitions/C_multi_model.xml
tests/data/models/functional_gzip/definitions/C_no_multi_model.xml
tests/data/models/functional_gzip/definitions/D_multi_model.xml
tests/data/models/functional_gzip/definitions/T12SS-forbidden.xml
tests/data/models/functional_gzip/definitions/T12SS-loner-exch.xml
tests/data/models/functional_gzip/definitions/T12SS-loner-multisystem.xml
tests/data/models/functional_gzip/definitions/T12SS-loner.xml
tests/data/models/functional_gzip/definitions/T12SS-multisystem.xml
tests/data/models/functional_gzip/definitions/T12SS-simple-exch-neutr.xml
tests/data/models/functional_gzip/definitions/T12SS-simple-exch.xml
tests/data/models/functional_gzip/definitions/T12SS-simple.xml
tests/data/models/functional_gzip/definitions/T12SS.xml
tests/data/models/functional_gzip/definitions/degenerated_systems.xml
tests/data/models/functional_gzip/definitions/uncomplete_degenerated_systems.xml
tests/data/models/functional_gzip/profiles/T1SS_abc.hmm.gz
tests/data/models/functional_gzip/profiles/T1SS_mfp.hmm.gz
tests/data/models/functional_gzip/profiles/T1SS_omf.hmm.gz
tests/data/models/functional_gzip/profiles/T2SS_gspD.hmm.gz
tests/data/models/functional_gzip/profiles/T2SS_gspF.hmm.gz
tests/data/models/functional_gzip/profiles/T4P_pilB.hmm.gz
tests/data/models/functional_gzip/profiles/T4P_pilW.hmm.gz
tests/data/models/test_loners/metadata.yml
tests/data/models/test_loners/definitions/MOB_cf_T5SS.xml
tests/data/models/test_loners/profiles/MOBP1.hmm
tests/data/models/test_model_package/LICENSE
tests/data/models/test_model_package/README.md
tests/data/models/test_model_package/metadata.yml
tests/data/models/test_model_package/definitions/model_def_1.xml
tests/data/models/test_model_package/definitions/model_def_2.xml
tests/data/models/test_model_package/profiles/cas2_TypeI-II-III.hmm
tests/data/models/test_model_package/profiles/cas3_TypeI.hmm
tests/data/models/test_model_package/profiles/cas3a_TypeI.hmm
tests/data/models/test_model_package/profiles/cas5_TypeI.hmm
tests/data/models/test_model_package/profiles/cas6_TypeI-III.hmm
tests/data/models/test_model_package/profiles/csf1_TypeU.hmm
tests/data/models/test_model_package/profiles/csf2_TypeU.hmm
tests/data/models/test_model_package/profiles/csf3_TypeU.hmm
tests/data/pack_metadata/bad_metadata.yml
tests/data/pack_metadata/good_metadata.yml
tests/data/pack_metadata/metadata_copyright_range.yml
tests/data/pack_metadata/metadata_no_cite.yml
tests/data/pack_metadata/metadata_no_copyright.yml
tests/data/pack_metadata/metadata_no_desc.yml
tests/data/pack_metadata/metadata_no_doc.yml
tests/data/pack_metadata/metadata_no_email.yml
tests/data/pack_metadata/metadata_no_license.yml
tests/data/pack_metadata/metadata_no_maintainer.yml
tests/data/pack_metadata/metadata_no_name.yml
tests/data/pack_metadata/metadata_no_vers.yml
tests/data/pack_metadata/metadata_poor_quality.yml