Metadata-Version: 1.1
Name: galaxy-lib
Version: 17.5.7
Summary: Subset of Galaxy (http://galaxyproject.org/) core code base designed to be used a library.
Home-page: https://github.com/galaxyproject/galaxy-lib
Author: Galaxy Project and Community
Author-email: jmchilton@gmail.com
License: AFL
Description: 
        .. image:: https://readthedocs.org/projects/pip/badge/?version=latest
           :target: https://galaxy-lib.readthedocs.org
        
        .. image:: https://badge.fury.io/py/galaxy-lib.svg
           :target: https://pypi.python.org/pypi/galaxy-lib/
        
        .. image:: https://travis-ci.org/galaxyproject/galaxy-lib.png?branch=master
           :target: https://travis-ci.org/galaxyproject/galaxy-lib
        
        .. image:: https://coveralls.io/repos/galaxyproject/galaxy-lib/badge.svg?branch=master
           :target: https://coveralls.io/r/galaxyproject/galaxy-lib?branch=master
        
        
        A small subset of the Galaxy_ project for reuse outside the core. This subset has minimal dependencies and should be Python 3 compatible.
        
        * Free software: Academic Free License version 3.0
        * Documentation: https://galaxy-lib.readthedocs.org.
        * Code: https://github.com/galaxyproject/galaxy-lib
        
        
        .. _Galaxy: http://galaxyproject.org/
        .. _GitHub: https://github.com/
        .. _Docker: https://www.docker.com/
        .. _Homebrew: http://brew.sh/
        .. _linuxbrew: https://github.com/Homebrew/linuxbrew
        .. _Vagrant: https://www.vagrantup.com/
        .. _Travis CI: http://travis-ci.org/
        .. _`tools-devteam`: https://github.com/galaxyproject/tools-devteam
        .. _`tools-iuc`: https://github.com/galaxyproject/tools-iuc
        .. _Publishing to the Tool Shed: http://planemo.readthedocs.org/en/latest/publishing.html
        .. _Common Workfow Language: http://common-workflow-language.github.io
        
        
        
        
        History
        -------
        
        .. to_doc
        
        ---------------------
        17.5.7 (2017-03-15)
        ---------------------
        
        * Updates to CWL library functionality for several months worth of CWL tool updates.
        * Allow finding tools by a URI-like strings (e.g. ``file://``, ``http://``, ``dockstore://``).
        * Bring in latest Galaxy updates.
        
        ---------------------
        17.5.6 (2017-03-01)
        ---------------------
        
        * Expanded options for mulled CLI tools and library functionality.
          Fixes #49.
        
        ---------------------
        17.5.5 (2017-02-26)
        ---------------------
        
        * Fix bug in 17.5.4 where under certain conditions conda-build would attempt to be setup
          with the conda --use-local flag - which is not allowed.
        
        ---------------------
        17.5.4 (2017-02-26)
        ---------------------
        
        * Fix local builds Conda support to reflect conda-build is required.
        * Fix default target path for miniconda installs.
        
        ---------------------
        17.5.3 (2017-02-24)
        ---------------------
        
        * Update against the latest Galaxy dev branch changes.
        * Update Conda utilities to allow using locally built packages.
        
        ---------------------
        17.5.2 (2017-02-21)
        ---------------------
        
        * Conda utility enhancements to fix a Planemo bug.
        
        ---------------------
        17.5.1 (2017-02-21)
        ---------------------
        
        * Various improvements to Galaxy tool linting.
        
        ---------------------
        17.5.0 (2017-02-16)
        ---------------------
        
        * Bring in the last of the Galaxy dev changes.
        * Allow Conda installs to target global Conda config (for Planemo)
        
        ---------------------
        17.1.2 (2017-01-23)
        ---------------------
        
        * Bring in the last of the Galaxy dev changes before branch of release_17.01.
        * Improvements to mulled testing thanks to @mvdbeek.
        
        ---------------------
        17.1.1 (2016-12-14)
        ---------------------
        
        * Revert changes to shell command execution in Galaxy that had unintended consequences for Planemo.    
        
        ---------------------
        17.1.0 (2016-12-12)
        ---------------------
        
        * Improved mulled logging thanks to @bgruening.
        * Bring in the latest Galaxy dev changes.
        
        ---------------------
        16.10.10 (2016-10-24)
        ---------------------
        
        * Fix mulled package data fetching for Mac OS X (thanks to @dannon).
        
        ---------------------
        16.10.9 (2016-10-21)
        ---------------------
        
        * Small fixes including to reflect mulled name on quay.io changed to biocontainers.
        
        ---------------------
        16.10.8 (2016-10-10)
        ---------------------
        
        * More mulled enhancements and bug fixes thanks to @bgruening and @daler.
        
        ---------------------
        16.10.7 (2016-10-08)
        ---------------------
        
        * More mulled enhancements and bug fixes thanks to @bgruening.
        * Fix bioconda support by adding conda-forge to list of default channels.
        
        ---------------------
        16.10.6 (2016-10-07)
        ---------------------
        
        * More mulled enhancements thanks to @bgruening.
        
        ---------------------
        16.10.5 (2016-10-04)
        ---------------------
        
        * Some docstring cleanup and minor tweaks to Conda support for downstream planemo mulled work.
        
        ---------------------
        16.10.4 (2016-10-03)
        ---------------------
        
        * More mulled fixes and enhancements.
        
        ---------------------
        16.10.3 (2016-10-02)
        ---------------------
        
        * Small mulled and Conda related fix and enhancements.
        
        ---------------------
        16.10.2 (2016-09-30)
        ---------------------
        
        * Fix setup.py for features in 16.10.1.
        
        ---------------------
        16.10.1 (2016-09-29)
        ---------------------
        
        * Updates for recents changes to Galaxy and initial mulled scripts and container resolver.
        
        ---------------------
        16.10.0 (2016-08-31)
        ---------------------
        
        * Updates for recent changes to Galaxy.
        
        ---------------------
        16.7.10 (2016-08-04)
        ---------------------
        
        * Updates for recent change to Galaxy.    
        
        ---------------------
        16.7.9 (2016-06-13)
        ---------------------
        
        * Updates for recent changes to Galaxy and cwltool.
        
        ---------------------
        16.7.8 (2016-06-05)
        ---------------------
        
        * Updates to include Galaxy library for verifying test outputs
          and the latest dev changes to Galaxy.
        
        ---------------------
        16.7.7 (2016-05-23)
        ---------------------
        
        * Fixes to CWL and Docker libraries for Planemo.
        
        ---------------------
        16.7.6 (2016-05-11)
        ---------------------
        
        * Fixes to cwl processing for Planemo.
            
        ---------------------
        16.7.5 (2016-05-11)
        ---------------------
        
        * Updates to cwl processing for Planemo.
        
        ---------------------
        16.7.4 (2016-05-10)
        ---------------------
        
        * Updates to cwl processing for Planemo.
        
        ---------------------
        16.7.3 (2016-05-07)
        ---------------------
        
        * Updates to cwltool_deps for Planemo.
        
        ---------------------
        16.7.2 (2016-05-06)
        ---------------------
        
        * Updates to tool parsing and linting for Planemo.
        
        ---------------------
        16.7.1 (2016-05-02)
        ---------------------
        
        * Update against the latest development branch of Galaxy.
        
        ---------------------
        16.7.0 (2016-04-21)
        ---------------------
        
        * Update against the latest development branch of Galaxy.
        
        ---------------------
        16.4.1 (2016-04-08)
        ---------------------
        
        * Update against the latest development branch of Galaxy.
        
        ---------------------
        16.4.0 (2016-02-15)
        ---------------------
        
        * Update against the latest development branch of Galaxy.
        
        ---------------------
        16.1.9 (2016-01-14)
        ---------------------
        
        * Fix a bug in the source distribution of galaxy-lib.
        
        ---------------------
        16.1.8 (2016-01-12)
        ---------------------
        
        * Update against Galaxy's release_16.01 branch.
        
        ---------------------
        16.1.7 (2016-01-03)
        ---------------------
        
        * Update against Galaxy's dev branch - including conda updates,
          dependency resolution changes, and toolbox updates.
        
        ---------------------
        16.1.6 (2015-12-28)
        ---------------------
        
        * Additional fixes to setup.py and updates for recent changes to
          Galaxy's dev branch.
        
        ---------------------
        16.1.5 (2015-12-22)
        ---------------------
        
        * Fix another bug that was preventing dependency resolution from
          working in Pulsar.
        
        ---------------------
        16.1.4 (2015-12-22)
        ---------------------
        
        * Another setup.py fix for job metrics module.
        
        ---------------------
        16.1.3 (2015-12-22)
        ---------------------
        
        * Python 3 fixes and updates for recent Galaxy dev commits.
        
        ---------------------
        16.1.2 (2015-12-21)
        ---------------------
        
        * Fix for missing galaxy.tools.parser package in setup.py.
        * Fix LICENSE in repository.
        
        ---------------------
        16.1.1 (2015-12-20)
        ---------------------
        
        * Fix small issues with dependencies, naming, and versioning with first release.
        
        ---------------------
        16.1.0 (2015-12-20)
        ---------------------
        
        * Setup project.
        
        .. _bioblend: https://github.com/galaxyproject/bioblend/
        .. _XSD: http://www.w3schools.com/schema/
        .. _lxml: http://lxml.de/
        .. _xmllint: http://xmlsoft.org/xmllint.html
        .. _nose: https://nose.readthedocs.org/en/latest/
        
Keywords: galaxy
Platform: UNKNOWN
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Developers
Classifier: Environment :: Console
Classifier: License :: OSI Approved :: Academic Free License (AFL)
Classifier: Operating System :: POSIX
Classifier: Topic :: Software Development
Classifier: Topic :: Software Development :: Code Generators
Classifier: Topic :: Software Development :: Testing
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 2
Classifier: Programming Language :: Python :: 2.7
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
