LICENSE
MANIFEST.in
README.md
requirements.txt
setup.cfg
setup.py
straintables/Definitions.py
straintables/InputFile.py
straintables/OutputFile.py
straintables/__init__.py
straintables/alignmentData.py
straintables/evaluateRecombinator.py
straintables/logo.py
straintables/updateAmpliconScores.py
straintables.egg-info/PKG-INFO
straintables.egg-info/SOURCES.txt
straintables.egg-info/dependency_links.txt
straintables.egg-info/entry_points.txt
straintables.egg-info/requires.txt
straintables.egg-info/top_level.txt
straintables/Database/StrainNames.py
straintables/Database/__init__.py
straintables/Database/annotationManager.py
straintables/Database/directoryManager.py
straintables/Database/genomeManager.py
straintables/DistanceEngine/Distance.py
straintables/DistanceEngine/__init__.py
straintables/DrawGraphics/__init__.py
straintables/DrawGraphics/drawTree.py
straintables/DrawGraphics/geneGraphs.py
straintables/Executable/BlastAmplicons.py
straintables/Executable/FastaPipeline.py
straintables/Executable/GenomePipeline.py
straintables/Executable/NCBIDownload.py
straintables/Executable/Protein.py
straintables/Executable/Straintables.py
straintables/Executable/WebViewer.py
straintables/Executable/__init__.py
straintables/Executable/compareHeatmap.py
straintables/Executable/detectMutations.py
straintables/Executable/initializePrimerFile.py
straintables/Executable/matrixAnalysis.py
straintables/Executable/primerFinder.py
straintables/PrimerEngine/GeneticEntities.py
straintables/PrimerEngine/PrimerDesign.py
straintables/PrimerEngine/PrimerDock.py
straintables/PrimerEngine/RealPrimers.py
straintables/PrimerEngine/__init__.py
straintables/PrimerEngine/ampliconSanity.py
straintables/Viewer/MatrixLabelGroup.py
straintables/Viewer/MatrixPlot.py
straintables/Viewer/__init__.py
straintables/Viewer/button_icons.py
straintables/Viewer/dissimilarityCluster.py
straintables/Viewer/ideogram.py
straintables/Viewer/mapBar.py
straintables/Viewer/matrixOperations.py
straintables/Viewer/plotViewport.py
straintables/skdistance/__init__.py
straintables/skdistance/_anosim.py
straintables/skdistance/_base.py
straintables/skdistance/_bioenv.py
straintables/skdistance/_mantel.py
straintables/skdistance/_permanova.py
straintables/skdistance/_permdisp.py