Metadata-Version: 2.1
Name: ngsscriptlibrary
Version: 1.0.5
Summary: Scripts for NGS data-analysis
Home-page: https://www.github.com/martinhaagmans/ngsscriptlibrary
Author: Martin Haagmans
Author-email: mahaagmans@gmail.com
License: MIT
Platform: UNKNOWN
Description-Content-Type: text/markdown
Requires-Dist: PyMySQL (>=0.8.1)
Requires-Dist: pybedtools (>=0.7.10)
Requires-Dist: PyVCF (>=0.6.8)
Requires-Dist: pysam (>=0.14.1)
Requires-Dist: pandas (>=0.23.0)
Requires-Dist: seaborn (>=0.8.1)
Requires-Dist: matplotlib (>=2.2.2)

# NGSSCRIPTLIBRARY

Collection of scripts to help with NGS data-analysis in the AMC.

## Prerequisites

zlib and BEDtools:

```bash
sudo apt-get install zlib-dev
wget https://github.com/arq5x/bedtools2/releases/download/v2.27.0/bedtools-2.27.0.tar.gz
tar -zxvf bedtools-2.27.0.tar.gz
cd bedtools2
make
sudo cp bedtools2/bin/* /usr/local/bin
```

python3-tkinter:
```bash
sudo apt-get install python3-tk
```


## Install

```bash
sudo pip install ngsscriplibrary
```


