Metadata-Version: 2.1
Name: scanpy
Version: 1.6.1
Summary: Single-Cell Analysis in Python.
Home-page: http://github.com/theislab/scanpy
Author: Alex Wolf, Philipp Angerer, Fidel Ramirez, Isaac Virshup, Sergei Rybakov, Gokcen Eraslan, Tom White, Malte Luecken, Davide Cittaro, Tobias Callies, Marius Lange, Andrés R. Muñoz-Rojas
Author-email: f.alex.wolf@gmx.de, philipp.angerer@helmholtz-muenchen.de
License: BSD
Platform: UNKNOWN
Classifier: Development Status :: 5 - Production/Stable
Classifier: Environment :: Console
Classifier: Framework :: Jupyter
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: Natural Language :: English
Classifier: Operating System :: MacOS :: MacOS X
Classifier: Operating System :: Microsoft :: Windows
Classifier: Operating System :: POSIX :: Linux
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Visualization
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|Stars| |PyPI| |PyPIDownloads| |BiocondaDownloads| |Docs| |Build Status|

.. |Stars| image:: https://img.shields.io/github/stars/theislab/scanpy?logo=GitHub&color=yellow
   :target: https://github.com/theislab/scanpy/stargazers
.. |PyPI| image:: https://img.shields.io/pypi/v/scanpy?logo=PyPI
   :target: https://pypi.org/project/scanpy
.. |PyPIDownloads| image:: https://pepy.tech/badge/scanpy
   :target: https://pepy.tech/project/scanpy
.. doesn't really add anything
   .. |Bioconda| image:: https://img.shields.io/conda/vn/bioconda/scanpy?logo=Anaconda&color=green
      :target: https://bioconda.github.io/recipes/scanpy/README.html
.. |BiocondaDownloads| image:: https://img.shields.io/conda/dn/bioconda/scanpy?logo=Anaconda&color=green
   :target: https://bioconda.github.io/recipes/scanpy/README.html
.. |Docs| image:: https://readthedocs.com/projects/icb-scanpy/badge/?version=latest
   :target: https://scanpy.readthedocs.io
.. |Build Status| image:: https://travis-ci.org/theislab/scanpy.svg?branch=master
   :target: https://travis-ci.org/theislab/scanpy
.. wait until we have better coverage ;-)
   .. |Coverage| image:: https://codecov.io/gh/theislab/scanpy/branch/master/graph/badge.svg
      :target: https://codecov.io/gh/theislab/scanpy

Scanpy – Single-Cell Analysis in Python
=======================================

Scanpy is a scalable toolkit for analyzing single-cell gene expression data
built jointly with `anndata <https://anndata.readthedocs.io>`__.  It includes
preprocessing, visualization, clustering, trajectory inference and differential
expression testing.  The Python-based implementation efficiently deals with
datasets of more than one million cells.

Discuss usage on Discourse_. Read the documentation_.
If you'd like to contribute by opening an issue or creating a pull request,
please take a look at our `contributing guide`_.
If Scanpy is useful for your research, consider citing `Genome Biology (2018)`_.

.. _Discourse: https://scanpy.discourse.group/
.. _documentation: https://scanpy.readthedocs.io
.. _contributing guide: CONTRIBUTING.md
.. _Genome Biology (2018): https://doi.org/10.1186/s13059-017-1382-0


